Cmac012843.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010009314.1:508984-519411[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0091 0.64 10.7 0.9 3 23 142 163 140 163 0.95 2 18 0.016 1.1 9.9 2.0 3 23 171 192 170 192 0.97 3 18 0.039 2.8 8.7 3.1 1 23 203 225 203 225 0.97 4 18 0.099 7 7.4 2.5 2 23 231 253 230 253 0.92 5 18 0.0021 0.15 12.7 3.2 1 23 263 285 263 285 0.98 6 18 0.28 20 6.0 3.8 2 23 292 314 291 314 0.90 7 18 0.0019 0.13 12.9 2.3 1 23 326 348 326 348 0.97 8 18 0.0012 0.086 13.4 1.7 2 23 357 379 356 379 0.96 9 18 0.0017 0.12 13.0 5.5 1 23 391 413 391 413 0.97 10 18 0.038 2.7 8.7 0.4 2 23 419 441 418 441 0.95 11 18 0.00046 0.032 14.8 5.9 1 23 453 475 453 475 0.98 12 18 0.83 59 4.5 0.1 2 14 481 493 480 495 0.88 13 18 0.027 1.9 9.2 0.8 5 23 530 549 529 549 0.95 14 18 0.0047 0.33 11.6 3.6 1 23 561 583 561 583 0.96 15 18 0.39 27 5.6 2.1 2 23 593 615 592 615 0.90 16 18 0.039 2.7 8.7 1.4 1 23 627 649 627 649 0.97 17 18 0.028 2 9.2 0.9 2 23 660 682 659 682 0.95 18 18 0.00066 0.046 14.3 1.7 2 23 695 716 695 716 0.97
Sequence Information
- Coding Sequence
- ATGCAGAATGAGGTGGCAGTTATTGATCAGATCAAAATGGAAGTGGGAGAAGTTAAAGTGGAAAAAATAGAGGTTGAAACTGAGTCATTTGGAGTTGAGCCGAACAGCTGGGAGTCTGTAGTTGAGGGTGCTCATGACGAAACAACAGACAGAATCATAGGTTTACAAAGAATAAAAGATGAACACAATTTTGTAGCAGCTGGAAGCAACATAGAAATTCTTGAAAAacaaagtataaaaataaaagtagaaGAGAACTGGGAGGACTGCAAACCATTTGAACCAATGTATATTACTGAGGAAGACATCTTTAAGCTTGAGAATAATGATGATTTAATTGATGGGAATACAAACATAGCTTTGAATAGTGGTCCAGAAGAGAAAATCCATGTTGAGTCTAAGGATTCAAGTGATGAACTGAATTGTTATAGTTGTAATTACACTACATCCTTCAAAAACCTCCTAGTTAAACATATTATGACAGAACACTCTAGCGATAATCCAAGCTTGTGCTGTCACTGTGATGCCACATTCGAAAGTAAGATTACTCTTGACGACCATATGATCAGGGTTCATCCAGATTTAACGTCTATTTCTAGTaaaatacatgaatgtacatattGCACATATAAAACTGTGGTGAAGACTCAATGGACCAGACATGTGAGTAGacactccaaaaataggctGAGGTGTATCCACTGTGAGGCAACCTACAAAACTAAAAGAAACCTGGATAATCATACACTCAGGAATCATCCTGATGCATCCATCACTAGTAAAGTATATGAGTGCGCCAATTGTACATATAAAACTACAGTGAAGATTCACTTGACCAAACATATGTCTAAACACACCAAGACCAACTACCTGAGGTGTAAGCACTGTGATGAAACATTTAAATGTAGAACAGGTCTGGATGGACATataattaggaaacaccctgatTTTATTGAAACCATAACTAGTaaaatacatgaatgtacatattGTGAATATAAAACTACAGTGAAGAGTCGTTTGGCAAACCACATGATTAGACACACTGGACACACTGATACTAAGTTGAGGTGTGAGCACTGCGATGATATGTTCAAACATAGAACAGCTCTGGCTGATCATATGATTAGGATACATCCTCATTTAATGGAAACTATAACTAGTAAAATACATGAATGTGAATATTGTACGTTTAAAACTACAGTGAAGGGTCACTTGACGAAACATATGCTCAaacacaacaaaactaagttaaCGTGCATGTACTGCATTGAAACGTTCAAACGTAGAATAGCTCTGGCTGACCATATAACCAGGAAACATCCAGGTTTTATAGGGTCTGTAAgccataaaatacataaatgtgAATATTGCACGTATAAAACTACAGTGAAGGGTCACTTGACCCGGCATATGATAAAACACACCAAGAGCGAGGTGAGGTGTATGCACTGTCATGAACCGTTCAAATATCCTTATTTGGTTGGAACCACAGCTAGTGAAATACGTGAATGTACAAATTGTGCACGTCAAATCGTCTTTGAGCCTCCAGAGAGTGCAGGTAACTTAAATCTCAGCGTACGCGTCCACTGTAACGCGacttataaaacaaaaaaaaatttggatgaTCATATAATTAAGAAACATCCAGAGTCTTTAGAATCTATTTCTAgtaaagtacatgaatgtatgtATTGTACATATAAAACTACTGTGAAGAGTCACTTGATTGAGCATATGATTCAACATACCGAGACTGCTGATATGGTTAAGCTGAGGTGTATACATTGTGATGAAATGTTCAAACATAGAACAGTTCTGGATGAACATATAATTAACAAACATCCGCATTTGATTGCAACTATAACTAACAAAATACACGAGTGTACGTATTGTGCGTATCAAACGGTCCTCAAGCCTAATTTTATCAGACATATGTTGCAGCATCCTGGGACAGTGTATAGCAAGAAGCTCAAGACTTGTGTTCACTGTAATGCAATATTCAAAGGTAAAGCTTCTCTTGATAATCATACAATCAGGGAACATCCTGATTCTGTAGCATCTGTTTCGTATAAATTACGTGAATGTGGACAGTgtacatataaaactaccctgaGTTCTAATTTTGCTAGACATATGCGGAAACATTCTAAAGCAGTGTGA
- Protein Sequence
- MQNEVAVIDQIKMEVGEVKVEKIEVETESFGVEPNSWESVVEGAHDETTDRIIGLQRIKDEHNFVAAGSNIEILEKQSIKIKVEENWEDCKPFEPMYITEEDIFKLENNDDLIDGNTNIALNSGPEEKIHVESKDSSDELNCYSCNYTTSFKNLLVKHIMTEHSSDNPSLCCHCDATFESKITLDDHMIRVHPDLTSISSKIHECTYCTYKTVVKTQWTRHVSRHSKNRLRCIHCEATYKTKRNLDNHTLRNHPDASITSKVYECANCTYKTTVKIHLTKHMSKHTKTNYLRCKHCDETFKCRTGLDGHIIRKHPDFIETITSKIHECTYCEYKTTVKSRLANHMIRHTGHTDTKLRCEHCDDMFKHRTALADHMIRIHPHLMETITSKIHECEYCTFKTTVKGHLTKHMLKHNKTKLTCMYCIETFKRRIALADHITRKHPGFIGSVSHKIHKCEYCTYKTTVKGHLTRHMIKHTKSEVRCMHCHEPFKYPYLVGTTASEIRECTNCARQIVFEPPESAGNLNLSVRVHCNATYKTKKNLDDHIIKKHPESLESISSKVHECMYCTYKTTVKSHLIEHMIQHTETADMVKLRCIHCDEMFKHRTVLDEHIINKHPHLIATITNKIHECTYCAYQTVLKPNFIRHMLQHPGTVYSKKLKTCVHCNAIFKGKASLDNHTIREHPDSVASVSYKLRECGQCTYKTTLSSNFARHMRKHSKAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -