Cmac009826.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- znf711
- Assembly
- GCA_900659725.1
- Location
- CAACVG010008077.1:2025-20074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.14 10 6.9 0.1 1 21 211 231 211 232 0.95 2 17 0.014 0.99 10.1 1.3 2 23 263 285 263 285 0.96 3 17 0.26 18 6.1 6.0 1 23 297 319 297 319 0.98 4 17 0.011 0.78 10.4 1.8 1 23 331 354 331 354 0.96 5 17 0.031 2.2 9.0 7.3 1 23 366 388 366 388 0.98 6 17 0.011 0.78 10.4 1.8 1 23 400 423 400 423 0.96 7 17 0.031 2.2 9.0 7.3 1 23 435 457 435 457 0.98 8 17 0.01 0.71 10.6 3.3 1 23 469 492 469 492 0.96 9 17 0.059 4.2 8.1 6.7 1 23 504 526 504 526 0.98 10 17 0.00058 0.041 14.4 3.0 1 23 538 561 538 561 0.97 11 17 0.0082 0.58 10.8 6.4 1 23 573 595 573 595 0.98 12 17 0.00036 0.025 15.1 0.5 1 23 605 628 605 628 0.96 13 17 0.0085 0.6 10.8 5.3 1 23 640 662 640 662 0.97 14 17 0.00043 0.03 14.9 2.9 1 23 672 695 672 695 0.97 15 17 0.67 47 4.8 9.6 1 23 707 729 707 729 0.97 16 17 0.00032 0.023 15.3 2.0 1 23 743 766 743 766 0.97 17 17 0.00022 0.015 15.8 5.5 1 23 778 800 778 800 0.98
Sequence Information
- Coding Sequence
- ATGGAGGACAACATGCCACCAATTAAAGatgaaattggaaaaataaaaaaggaaagCTTTGCAGAAATAGATGTCCTACACAACACAGTTGATTTGGTGATCAAAACTGAGAGCTATGCATGTACAAATGGAATATGGGATTTGCCATTCACAAGAGTGAAAGACGAGCAAAGCATGGAGAATTTGGAACAATGTGAACTGACTTTTGACACAAAAGAACACATAAAAATGGAAAACATATCAGTTGATGTTGAAGTACAGGAATCTGAAATGGACAACTTGAAACTTGATATTCGGACTGAAGAAATGTACAAGTACATCAAACCTGAcattgaaaatattgaaaaatttgatggAGTGAAAGAAGAGCAAAGCACAGAGGATAGAGGAAAATATGAACCGACTTGTGATACAAAAGAACATATAAAAATCGAGGATACGTCAGCAGTTGATGTTAAAGTTGAAGTTCAGGATACTGAAATCGACAGCCTGAAACAGGATATGCTGACTGAGGAGCTGGACATCAAACCGGACATTGAAAGTGTTGATGCAGAATCAGACGGtgttgcAAATCAAATACAGACTGAAAACGGACTTGGCGTGGTGCATAGGAAATCTGAACAAGAAATGTTCGTCTGCTATGTTTGCAATCTCATCATTCACAGCAAGAAAGATTTGATAAATCACATCAATGTTTCAGGTTGTAGTGTAAAAAGTCGTTTGAAAAAAACGTTAGcaatttacaaaataaaacaTCTTGAAGCTCAGAATCATGTTAAAAAAAGACAGTGTATGCATTGCAATGCGATATTCAAAAAGAAAGTGTCTCTTGATGACCATATCATCAAAAATCATGAAGAGTTTATTACATATGTAACTTCTAAAATCCATCAGTGTAAATATTGTAGTTATAAAAGTACAATAATAGATAAATTCAAACGTCATTTGAAGAAACATCCTGAATCTGGGTGTGGTGTTACACCTAAAAAGTACGCTTGTAACTATTGTGAAGTGAGATTTCATAGAAAAATATATCTTGATAACCATGTCCTCAGAAATCATAAAGAATGTATCACATCTGTATCTTCTAAAATTCATCAGTGTAAACATTGTAGTTACAAAACTACGGTAATGGctaattttactcgtcatttgAAGAAACATCCTGAATCTGGGTGTGGTGTTACACCTAAAAAGTACGCTTGTAACTATTGTGAAGTGAGATTTCATAGAAAAATATATCTTGATAACCATGTCCTCAGAAATCATAAAGAATTTACAACATCTGTATCTTCTAAAATTCATCAGTGTAAACATTGTAGTTACAAAACTACGGTAATGGctaattttactcgtcatttgAAGAAACATCCTGAATCTGGGTGTGGTGTTACACCTAAAAAGTACGCTTGTAACTATTGTGAAGTGAGATTTCATAGAAAAATACATCTTGATAACCATGTCCTCAGAAATCATAAAGAATTTATCACATCTGTATCTTCTAAAATTCATCAGTGTAAACATTGTAGTTACAAAACTACGGTAATGGctaattttactcgtcatttaTCGAAACATCCTGGATCTGGGTGCGGTGTTACACCTAAACAGTACCCTTGTACCCATTGCCATGCGATATTTAGAAGAAAAACATATCTTGATGAACATATCATCAGAAATCACGAAGAGTTTGCTACATCAGTTTCTTCTAAAATTCATCAGTGTAAACATTGTAGTTATAAAACTACAACAATAATTAATTTGACTCGTCATTTATCGAAACATCCTGAATCTGGGTGTAGTTTTAAACAGTACCCTTGTAACCATTGCTATGcgatatttaaaacaaaaccaGCTCTTAATAACCATGTCCTCATAAATCACGAAGAATTTATTACATCTGTCTCTTCTAAAATCCATCAGTGTAAATATTGTAGTTATAAAACTACCGTATCGTCTAGTATGACTCGTCATTTGACGAAACATCCTGAATCTGGGTGTAGTTTGAAACAGTACCCTTGTAACCATTGCCATGCGATATTTAGAAGAAAAACGTATCTTGATGAACATATCATCAGAAATCACGAAGAATTTATTACATCTGTCTCTTCTAAAATCCATCAGTGTAAACATTGTAGTTATAAAACTACCCTATCGTCTAGTATGACTCATCATTTGACGAAACATCCTGAATCTGGGTGTAGTTTTACACCTAAACAAAAACAGTACCCTTGTAACCATTGCCATgcgatatttaaaaagaaagcaACTCTTGATGCCCATATCCTCAGAAATCATGAAGAATTTATAACATCTGTTTCTTCTAAAATGTATGAGTGTAAACATTGTAGTTATAAAACTACGACAGCGTCTAATTTCACTCGTCATTTGACGAAACATCCTGAATAA
- Protein Sequence
- MEDNMPPIKDEIGKIKKESFAEIDVLHNTVDLVIKTESYACTNGIWDLPFTRVKDEQSMENLEQCELTFDTKEHIKMENISVDVEVQESEMDNLKLDIRTEEMYKYIKPDIENIEKFDGVKEEQSTEDRGKYEPTCDTKEHIKIEDTSAVDVKVEVQDTEIDSLKQDMLTEELDIKPDIESVDAESDGVANQIQTENGLGVVHRKSEQEMFVCYVCNLIIHSKKDLINHINVSGCSVKSRLKKTLAIYKIKHLEAQNHVKKRQCMHCNAIFKKKVSLDDHIIKNHEEFITYVTSKIHQCKYCSYKSTIIDKFKRHLKKHPESGCGVTPKKYACNYCEVRFHRKIYLDNHVLRNHKECITSVSSKIHQCKHCSYKTTVMANFTRHLKKHPESGCGVTPKKYACNYCEVRFHRKIYLDNHVLRNHKEFTTSVSSKIHQCKHCSYKTTVMANFTRHLKKHPESGCGVTPKKYACNYCEVRFHRKIHLDNHVLRNHKEFITSVSSKIHQCKHCSYKTTVMANFTRHLSKHPGSGCGVTPKQYPCTHCHAIFRRKTYLDEHIIRNHEEFATSVSSKIHQCKHCSYKTTTIINLTRHLSKHPESGCSFKQYPCNHCYAIFKTKPALNNHVLINHEEFITSVSSKIHQCKYCSYKTTVSSSMTRHLTKHPESGCSLKQYPCNHCHAIFRRKTYLDEHIIRNHEEFITSVSSKIHQCKHCSYKTTLSSSMTHHLTKHPESGCSFTPKQKQYPCNHCHAIFKKKATLDAHILRNHEEFITSVSSKMYECKHCSYKTTTASNFTRHLTKHPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -