Cmac003467.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010004811.1:16079-34921[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.2 14 6.5 1.1 1 21 184 204 184 205 0.95 2 23 5.9 4.1e+02 1.9 0.4 12 23 206 217 205 217 0.88 3 23 0.031 2.2 9.0 0.6 1 23 253 276 253 276 0.92 4 23 0.0012 0.083 13.5 0.2 2 23 284 306 283 306 0.96 5 23 0.44 31 5.4 1.3 1 20 361 380 361 381 0.94 6 23 0.02 1.4 9.6 1.2 1 23 400 423 400 423 0.93 7 23 0.29 21 5.9 3.3 1 23 435 457 435 457 0.98 8 23 0.005 0.35 11.5 1.0 1 23 467 490 467 490 0.95 9 23 6.7 4.7e+02 1.7 4.8 1 23 502 525 502 525 0.94 10 23 0.0052 0.37 11.5 1.8 2 23 537 559 537 559 0.96 11 23 0.06 4.2 8.1 2.8 1 23 571 594 571 594 0.93 12 23 0.034 2.4 8.9 1.2 1 23 616 639 616 639 0.97 13 23 0.0013 0.091 13.4 0.5 1 23 651 673 651 673 0.98 14 23 0.002 0.14 12.8 2.0 2 23 684 706 683 706 0.95 15 23 0.21 15 6.4 3.6 1 23 718 740 718 740 0.98 16 23 0.015 1 10.0 2.9 2 23 751 773 750 773 0.95 17 23 0.00017 0.012 16.1 0.3 2 23 786 807 785 807 0.97 18 23 0.014 0.99 10.1 2.0 2 23 812 834 812 834 0.96 19 23 0.002 0.14 12.8 1.8 1 23 846 868 846 868 0.97 20 23 0.0008 0.056 14.0 0.3 2 23 880 902 880 902 0.96 21 23 0.013 0.95 10.2 1.2 1 23 915 937 915 937 0.97 22 23 6e-05 0.0042 17.6 0.9 3 23 949 970 948 970 0.96 23 23 0.017 1.2 9.9 0.6 1 23 982 1005 982 1005 0.96
Sequence Information
- Coding Sequence
- atggatacaaaaataaaaaaagaagtaaacaCAAATGATGAAGTAGAGAGTAGAGGCAGTATCAAACTTGAACAAACAGATTCGCAGCATAATGTTAATTATGATAGgatTGGATTTGAGGAAGTGAGAATGAAAGTTGAATCTGACTCATCTACATATTATGCAATGGGTGTAGAAGGTGGCAAAGTAATGTCTGAGACTACCCCCCTCATAGGAGAAAAGGGGATCAAATATGAGACTGATGTAGCAGATTATGTTACACATGATATGTTGAAAAGAATAAAAGCTGAGCCTAACGTGGAACAATGGGATGAACCTAACCAAGCAATGGATGTAGCTGAGCCAGTAAAAATTGAGAAGCTTGGAGGAGTTAGAGTTAAAGAGGAAGCAGTAGACAACaccaaaactgaaaatatggATCCTACAGAACTTACTGATGAAGTGGACATCAAACCTGAAAGCCAGGCTGATGGAGGGTATAGTGCTATGACTGGCAAACACTGGGAAACAGGACTAGGTGTGGGGCATAGAAAAGCTGGCGAAGAACTATTCATTTGCTATAATTGCAGCTATACGGCTCACAGTAAAAAAAGCTTGAAGGTGCAcataaaaaacagcaattgtAATTTAACTGCACATAAAAGGTCACATCCGTCAAATAGACACGCATCTAAGAAATCTGATAAGACGTTCGTGAAAAAAGCTTATGTGGGTAATCACGTTATTAGAAAACATACAGAACTGATAGGAAAAGTATTTACATGTTCAGAATGTTTATACGAAACTACTAGGAAGGATAGGTTAGAAAGTCATATTGTACTTAAACATCCTACTGATAAGCTGGGTATTAAGTGTCCTCGTTGTAATGCCAAATTCATTAATAACCAAACGTTAAGTGATCATATACTAAGAATACATCCGAATAGCTTGGCTTTTGTTACTACGAGAGTATATGAATGTATTGAATGTACCTATAAAACTATTAAGAAGAGTAACTTTGATTGCCATATAGTAGCCAAAAATCGGAAATACCAGAAAAAAGGACTAGGATTACGACGTAGAAAAGCAGAAGGAGCATTGTTCATTTGCTATAACTGTAACTATTCCTCACACAACAAGAAGAGTTTAAGCAGCCACGTGGCTGCTAGCAATTGTAATTTGAATTCTGCACGCAATATGTCGCTGGCATCAGATAAACATACTTGTAAAGAATGTAAAAAGGTCTTCGGAGGAAAACGAAGTTGGGGTAATCATGTAATCAAGATGCATCCACATCTAATTCCTACGCTTACGATTAAACTATACGAGTGTGCAATTTGCGAATATAAAAATACCCATAAGAATAACTATGACCACCACATGTTGGTACATCTTGGTCCATACTCCAGCCGTAAGATTTATACGTGCAGTTTCTGTAGCGCGACATACAAAACTAAAGAATTCCTGAATGATCATGTGTTAAACGTGCATCCTGACTGTATTTCGtccatcagaagtgggatacatTCTTGTTCGGAATGCGCATTCAAGACGACTAACAAGATCGTGTTACACAGGCATCTGTTTAAGAATCATCCAGATGAAGCAGCTAAGTGCAAGATAGGTAGAACTTGTTTGCACTGTAACGCGAGATTTAGGGATAAGGCAACATTAGATGATCATATATTGAAAAAACATCAGGAGCATTTGTCCTCGGTTACTAGCAAAATACATGCATGCTCAGAatgcacttataaaactaccAAAAAGGGTAAGTTACATAGTCATATCATGGCGATACATCCACTGGAAGGGTCAACTCCCAAGCGCAAAAAACGAAAGGGTAGTTCAGATGAACCTCCGTTTTACACTTGCGAACATTGCAATGTGATTGTTAAAAAAAAGCAAGCGTTAGATGATCACATAACAAGAAAACATCCGGATTTTATTTCGTCCGTTACGCGGCAGATATATCAGTGTGAAAACTGcgaatataaaactatttataaGGGAGACATGACTAGACATATATCGGTACACCCTGGTGCTATTTCTAATTTCAAACTCAGCAGGTGTGAACACTGCACTGCCACATTTAAAACCAAAAGAGCCTTAAGTGATCACGTAATACGGAACCATCCCAATTTTATTGCGTCggtcaaacaaaaaatacacgaATGTCCAAGTTGCTCATATAGGACTGTTCAAAAGTGTGATATGGACAGGCATCTATTGACACATTCTGATATAGTTTGTAATGTTCAACTGACGAGATGTTCGCATTGTAGCTCTACGTTTAAAACACAAAAAGGGCTAGATGAACATATAGCGAAAAAACATCCAATTTTTAGCGAATCTTCTACACATCAAATACTCCAATGCCCAAATTGCACATATAGAACTATCCAGCAGTCTGAACTAGACAAACATATGTTGGTACATTTGCGACTCAGAAGATGCATGCATTGCGATGCTACTTTTAAAATGAGAAGGACGCTAGACAATCATATAATAAGAGAACATCCAGACTTCATCGGCTCAGTTGCAGGAAAGATACATGAATGCCCAAATTGCACATATAAAAGTACCAAAATAAGTGAGCTAAAGAGACATCTTTCGGTGCATTCCAATGCTGGTTCTGATACTGAACTAAGCAATGTATGTACATATTGTAATGCTGCATTTAAATTGAAAAGGACGCTGGCTAAACATATAATTAAAGAACATCTTGAGGTGTTCGATACACCAGGATCACGAAAGATACATCAGTGTCCAAACTGCACATATAAGACTACTAAGGTAGGCGACCTATACAGTCACATCTCCGTACATTCTGAAACGGATTCTAAATTTGAGCTCAACGCATGTGTCcattgtaataaaatatttaaaagaaaaggtATGCTGGAGAGCCACATAATAAAAGTGCATTCGAACGAAACGCCCCCTTTAAAAAGTAAAAGATATGAATGCGCAAATTGCACCTATAAGAGTGCCCGAAAAGACAGATTAGTCAAACATATAACGTCAATGCATGGTGGAGCTTCTAGAGTCAATGCGACTGTTAAAGTAAAAAAGGAGATTGATGATGATAAAATAAAAGACGAGAATGTCAAATAA
- Protein Sequence
- MDTKIKKEVNTNDEVESRGSIKLEQTDSQHNVNYDRIGFEEVRMKVESDSSTYYAMGVEGGKVMSETTPLIGEKGIKYETDVADYVTHDMLKRIKAEPNVEQWDEPNQAMDVAEPVKIEKLGGVRVKEEAVDNTKTENMDPTELTDEVDIKPESQADGGYSAMTGKHWETGLGVGHRKAGEELFICYNCSYTAHSKKSLKVHIKNSNCNLTAHKRSHPSNRHASKKSDKTFVKKAYVGNHVIRKHTELIGKVFTCSECLYETTRKDRLESHIVLKHPTDKLGIKCPRCNAKFINNQTLSDHILRIHPNSLAFVTTRVYECIECTYKTIKKSNFDCHIVAKNRKYQKKGLGLRRRKAEGALFICYNCNYSSHNKKSLSSHVAASNCNLNSARNMSLASDKHTCKECKKVFGGKRSWGNHVIKMHPHLIPTLTIKLYECAICEYKNTHKNNYDHHMLVHLGPYSSRKIYTCSFCSATYKTKEFLNDHVLNVHPDCISSIRSGIHSCSECAFKTTNKIVLHRHLFKNHPDEAAKCKIGRTCLHCNARFRDKATLDDHILKKHQEHLSSVTSKIHACSECTYKTTKKGKLHSHIMAIHPLEGSTPKRKKRKGSSDEPPFYTCEHCNVIVKKKQALDDHITRKHPDFISSVTRQIYQCENCEYKTIYKGDMTRHISVHPGAISNFKLSRCEHCTATFKTKRALSDHVIRNHPNFIASVKQKIHECPSCSYRTVQKCDMDRHLLTHSDIVCNVQLTRCSHCSSTFKTQKGLDEHIAKKHPIFSESSTHQILQCPNCTYRTIQQSELDKHMLVHLRLRRCMHCDATFKMRRTLDNHIIREHPDFIGSVAGKIHECPNCTYKSTKISELKRHLSVHSNAGSDTELSNVCTYCNAAFKLKRTLAKHIIKEHLEVFDTPGSRKIHQCPNCTYKTTKVGDLYSHISVHSETDSKFELNACVHCNKIFKRKGMLESHIIKVHSNETPPLKSKRYECANCTYKSARKDRLVKHITSMHGGASRVNATVKVKKEIDDDKIKDENVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -