Cmac004478.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010006430.1:56435-141045[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.98 69 4.3 0.1 3 23 26 47 25 47 0.93 2 26 0.028 2 9.1 4.5 1 23 59 81 59 81 0.97 3 26 0.0022 0.16 12.6 1.9 2 23 90 112 89 112 0.96 4 26 0.013 0.93 10.2 2.0 1 21 124 144 124 145 0.94 5 26 4.7 3.3e+02 2.2 5.9 1 23 153 176 153 176 0.96 6 26 0.12 8.2 7.2 2.0 1 23 188 210 188 210 0.97 7 26 0.0075 0.53 11.0 1.1 2 23 221 243 221 243 0.96 8 26 3.1 2.2e+02 2.7 1.8 2 23 256 277 255 277 0.90 9 26 0.0016 0.11 13.0 1.6 2 23 287 309 286 309 0.95 10 26 0.0099 0.7 10.6 3.0 1 23 321 343 321 343 0.97 11 26 0.0016 0.11 13.0 1.6 2 23 353 375 352 375 0.95 12 26 0.0099 0.7 10.6 3.0 1 23 387 409 387 409 0.97 13 26 0.0016 0.11 13.0 1.6 2 23 419 441 418 441 0.95 14 26 0.16 11 6.8 1.6 1 23 453 475 453 475 0.97 15 26 0.0016 0.11 13.0 1.6 2 23 485 507 484 507 0.95 16 26 0.16 11 6.8 1.6 1 23 519 541 519 541 0.97 17 26 0.0016 0.11 13.0 1.6 2 23 551 573 550 573 0.95 18 26 0.0099 0.7 10.6 3.0 1 23 585 607 585 607 0.97 19 26 0.0016 0.11 13.0 1.6 2 23 617 639 616 639 0.95 20 26 0.16 11 6.8 1.6 1 23 651 673 651 673 0.97 21 26 0.0016 0.11 13.0 1.6 2 23 683 705 682 705 0.95 22 26 0.16 11 6.8 1.6 1 23 717 739 717 739 0.97 23 26 0.0055 0.39 11.4 1.9 2 23 749 771 748 771 0.95 24 26 0.0099 0.7 10.6 3.0 1 23 783 805 783 805 0.97 25 26 0.0018 0.12 12.9 1.7 2 23 815 837 814 837 0.95 26 26 0.45 32 5.4 5.2 1 23 849 871 849 871 0.97
Sequence Information
- Coding Sequence
- ATGAAAGTTCATCAGAACAAGAAAAAGGTGTTCGGGTGTGATCCTAGCAGTAGTAATTCTAGAGGTAGCAGAATATGCTTACAGTGTAACGCGATATTTAAACTTCAAATATCTCTAGATGACCACATTGTAAGAACTCATCCAAACTTTATTTCCGCTGTGACtagaaaaatacatgaatgtacacTATGTGCCTTTAAAACTACTAGAAGCAGTTCTTTTAATAAGCATCTTTCAAAACATCGTGAGACAAATACTGAACGCAGCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgcTAGACGATCATATAATAAAGAATCatccaaattttgtttcatcTGTTACTAGCAAAATACACAAATGTACAAATTGCACTTTTGCTACTACTAGGACCAATGACTTGAAGAGACATCTGTTAAGATATTCAGAAACTCCTAAACCACATACATGTTTGCATTGTACAGCTGTATTTAAATGGAAAGTTTCCTTGGACCACCATACAATGaagaaacatccaaattttatcTCATCTGTTACTAGCAAAATACACAAATGTACAAATTGCTCTTATACAACTCTCGTAAGCTCTGACCTGAAGATACATTTGATAAGACATACCCAAACCCCTGCTAATCACTTACTTGCTACATGTGAATTTTGTCGTGTGGCATTCAAAAGGAAACGTTCGTTAGATGACCATATAATaaagaaacatccaaattttgtttcatcTGTTACTAGCAAAATACATGAATGTATATTATGTACCTTTAAAACTACCGTAAGAggttcttttaataaacatCTTTTAATACATCCTGAAACAAATGCTAGTCAGCTCATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACTAGAAGCAGTTCTTTTAATAAACATCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagaaaaatacatgaatgtacacTATGTGCCTTTAAAACTACTAGAAGCAGTTCTTTTAATAAACATCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACCGTAAGAggttcttttaataaacatCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACCGTAAGAGCTTCTTTTAATAAACATCTTTTAATACATCCTGAAACAAATGCTAGTCAGCTCATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACTAGAAGCAGTTCTTTTAATAAACATCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatccgttactagaaaaatacatgaatgtacacTATGTGCCTTTAAAACTACCGTAAGAggttcttttaataaacatCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACCGTAAGAggttcttttaataaacatCTTTTAATACATCCTGAAACAAATGCTAGTCAGCTCATCACTTGTACACACTGTACAGcgacatttaaaaagaaaatatcgTTAGATGACCATATAATAAGGAAACatccaaattttgtttcatctgttactagcaaaatacatgaatgtacacTATGTGCCTTTAAAACTACTAGAAGCAGTTCTTTTAATAAACATCTTTTAATACATCCTGAAACAAATTCTACCCAGCTTATCACTTGTACACACTGTACAGcgacatttaaaaacaaaatatcgtTAGATGACCATATAATaaagaaacatccaaattttgtttcatctgttactagaaaaattcacaaatGTACAAAATGCTCTTTTAAAACTACCATCGCTACCCAGTTGAAGAAACATTCGTTGAAACATACCCCCCGACCATGA
- Protein Sequence
- MKVHQNKKKVFGCDPSSSNSRGSRICLQCNAIFKLQISLDDHIVRTHPNFISAVTRKIHECTLCAFKTTRSSSFNKHLSKHRETNTERSTCTHCTATFKNKISLDDHIIKNHPNFVSSVTSKIHKCTNCTFATTRTNDLKRHLLRYSETPKPHTCLHCTAVFKWKVSLDHHTMKKHPNFISSVTSKIHKCTNCSYTTLVSSDLKIHLIRHTQTPANHLLATCEFCRVAFKRKRSLDDHIIKKHPNFVSSVTSKIHECILCTFKTTVRGSFNKHLLIHPETNASQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTRSSSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTRKIHECTLCAFKTTRSSSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTVRGSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTVRASFNKHLLIHPETNASQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTRSSSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTRKIHECTLCAFKTTVRGSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTVRGSFNKHLLIHPETNASQLITCTHCTATFKKKISLDDHIIRKHPNFVSSVTSKIHECTLCAFKTTRSSSFNKHLLIHPETNSTQLITCTHCTATFKNKISLDDHIIKKHPNFVSSVTRKIHKCTKCSFKTTIATQLKKHSLKHTPRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -