Cmac010920.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010008485.1:86495-93599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.082 5.8 7.7 0.2 1 19 32 50 32 51 0.83 2 19 0.11 8 7.3 1.3 1 20 132 151 132 153 0.95 3 19 0.00043 0.03 14.9 0.4 1 23 161 183 161 183 0.98 4 19 0.0015 0.1 13.2 3.4 1 23 192 214 192 214 0.99 5 19 0.017 1.2 9.9 1.3 1 23 222 244 222 244 0.99 6 19 0.0091 0.64 10.7 0.3 1 23 252 274 252 274 0.98 7 19 0.002 0.14 12.8 3.0 1 23 283 305 283 305 0.99 8 19 0.018 1.3 9.8 3.4 1 23 313 335 313 335 0.98 9 19 0.0028 0.2 12.3 3.2 1 23 343 365 343 365 0.98 10 19 0.043 3.1 8.6 7.5 1 23 374 396 374 396 0.98 11 19 0.0025 0.18 12.5 3.0 1 23 405 427 405 427 0.98 12 19 0.0014 0.1 13.2 3.8 1 23 435 457 435 457 0.98 13 19 0.0013 0.089 13.4 2.4 1 22 465 486 465 488 0.90 14 19 1 73 4.2 1.1 2 23 496 517 495 517 0.94 15 19 0.0033 0.23 12.1 4.3 1 23 523 545 523 545 0.98 16 19 0.016 1.2 9.9 3.3 1 23 554 576 554 576 0.98 17 19 0.0075 0.53 11.0 1.3 3 23 587 607 585 607 0.96 18 19 0.0084 0.59 10.8 6.7 1 23 614 636 614 636 0.98 19 19 0.0046 0.32 11.6 0.6 2 23 644 665 643 665 0.97
Sequence Information
- Coding Sequence
- atgtCTCAATCTGAAGCGTTGGCAATTGATAGTAGAAGTGTGACAGATAATGGAACTGAGATTGCCAATGAAGGTACAGCTGCTTGTGTTTATTACAGTTGCCGCTACTGTACTAAAAGTTTTGTCTTGGCTGAGGCCAGAGCAAAGCATGAGGTGCAGTGTTCAATGAGTCCAGAGCTAATAATACATTTATCACTTGCCGACTTCCAAGATGCTGAGGAGATTGGAAGGATGAGCAGTCAGTCTAGTCCCAAAAAaaaacgccTGCGTCATCAACAGATACAGTCAAAAGGTGCAAAACAGGAATGTAGGTCACACAAAACAAATTGTGATGCGAAGGAATCTTCTAAAAAGAATTTGTTAACTAATGAAGGAAAAGTAGCAAAAAGCCATTACAAGTGTGAACAATGTCCCTATGAAACACACATAGAGAGGAACCTACAGAAACATATAACTCATGATGCAGTTAAGAGAAAAAGATATAGTTGTGTTATATGCGACTATGTAACCCCCTATAAAGACAAATTAAAGCAACATGAATTAACTCATGATTTATTGgcggaaaataaaaatttccagTGTGCAAAATGTGATTTCAGAACCCATTACAAGGATAGCTTGATAAATCATATGATGCGTCATAATCCTTcaatcaacaagaagtacaaGTGTGAACAATGTCCCTATGAAACACATGTAGGGAAGTATCTGCAGAAACATATTATAACTCATGATGCAGTTAAGAGAAAAAGATATAGGTGTGTTATATGCGACTTTGTAACCCCCTATAAAGTCAGATTAAACCAACATGAATTAACTCATGATGTATTGGCGCAAAAGAAAAATTTCCAGTGTGCAAAATGCGACTTTAGAACCCATTACAAGGGGTCCTTGATAAATCATATGATGCGTCACAACCCTacaatcaacaagaagtacaaGTGCGAACAATGTGACTTTAAAACCGTTCACAAGAATAGTTTGGACCTACATAAACTTACTCATTTAGCAGTGCGTGATAAGTGTTTTGAATGTGATCAATGTGATTATAAAACCGATCGTAAGGACTGTTTAAGGCTGCATGTTAAAAATCATATGCTACTTGATACTAACAAGAAATACAAATGTGATATGTGCGATTTCGAAAGCCATTATAAGAGTAATTTAAGGCACCATAAATTTACTCATGATACTGAGGGAGTTCATAAAAAGTACAAGTGTGAActgtgtgattataaaacctatTTTGAGAAAGACTTGAGAAAACATAAATTGACTCATGACGTTTTAGCAGATAAAAAATTCCACTGTGACCAATGTGATTATAATACTAATTTTAAGAACAATTTGGTCAGACATCAGTTGACTCACAATGCACAGTCAGACAAAAAGTTTCAGTGTAAAGAGTGTGGGTATAGAACCAAtctgaaagagaatttaaagaAACATGATATGATTCATCATGTGGTGCTTGATAAGAATCTAAAGTGTGATTTGTGTGGTTATAAAACCCATATAGAGCTGTATTTCAGGACCCATATAATCATGcatgaaaaaaaaaggaatcaCAAATGCGACCTATGTGATTATAAAGCAAAGAACAAAACAACCTTGAAAAACCATAAATTAACTCATGATGTAGAGGGAATTCATAACATATACAAGTGTGAACAGTGCAGTTATAAAACCAATCttaaatcaaaattaaaaagtCATAATCTAACTCATGAATTAGCTGGAGCGcctaaaaatatattctgcgaTCAATGTGATTTCAAAACCACCCGCGAAAAATATCTAAAAGTACATAAACAAATACATGGACCAATTGATAAGAAATTCAAGTGTAAACACTGTGATTTTAAAACTCGTCTGAAGGGCAATTTGAAGCACCATGAATTATCTCACGGTACAGATGCTAAAAAATTGCAATGTGAGCTGTGCGATTTTAGGACCGCTTACAGACAATCTTTAAAGTACCATGTGAGAATTCATAGTAAAACAATAAACGAGTGA
- Protein Sequence
- MSQSEALAIDSRSVTDNGTEIANEGTAACVYYSCRYCTKSFVLAEARAKHEVQCSMSPELIIHLSLADFQDAEEIGRMSSQSSPKKKRLRHQQIQSKGAKQECRSHKTNCDAKESSKKNLLTNEGKVAKSHYKCEQCPYETHIERNLQKHITHDAVKRKRYSCVICDYVTPYKDKLKQHELTHDLLAENKNFQCAKCDFRTHYKDSLINHMMRHNPSINKKYKCEQCPYETHVGKYLQKHIITHDAVKRKRYRCVICDFVTPYKVRLNQHELTHDVLAQKKNFQCAKCDFRTHYKGSLINHMMRHNPTINKKYKCEQCDFKTVHKNSLDLHKLTHLAVRDKCFECDQCDYKTDRKDCLRLHVKNHMLLDTNKKYKCDMCDFESHYKSNLRHHKFTHDTEGVHKKYKCELCDYKTYFEKDLRKHKLTHDVLADKKFHCDQCDYNTNFKNNLVRHQLTHNAQSDKKFQCKECGYRTNLKENLKKHDMIHHVVLDKNLKCDLCGYKTHIELYFRTHIIMHEKKRNHKCDLCDYKAKNKTTLKNHKLTHDVEGIHNIYKCEQCSYKTNLKSKLKSHNLTHELAGAPKNIFCDQCDFKTTREKYLKVHKQIHGPIDKKFKCKHCDFKTRLKGNLKHHELSHGTDAKKLQCELCDFRTAYRQSLKYHVRIHSKTINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -