Cmac012949.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- Znf142
- Assembly
- GCA_900659725.1
- Location
- CAACVG010009359.1:74609-86481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0006 0.042 14.4 0.9 2 22 196 216 195 216 0.94 2 14 0.0021 0.15 12.7 4.6 1 23 241 264 241 264 0.94 3 14 0.12 8.6 7.2 5.4 1 23 276 298 276 298 0.94 4 14 0.00037 0.026 15.1 0.9 3 23 306 326 304 327 0.94 5 14 1.6e-05 0.0011 19.4 2.1 1 23 339 361 339 361 0.97 6 14 0.00017 0.012 16.1 1.1 2 23 370 392 370 392 0.96 7 14 0.00071 0.05 14.2 3.4 1 23 404 426 404 426 0.98 8 14 0.00062 0.044 14.4 1.3 2 23 435 457 434 457 0.94 9 14 0.0045 0.32 11.7 0.6 2 23 470 491 469 491 0.94 10 14 0.0012 0.084 13.5 3.1 2 23 500 522 499 522 0.96 11 14 0.0028 0.2 12.3 8.7 1 23 534 556 534 556 0.97 12 14 0.00031 0.022 15.3 4.6 2 23 565 587 564 587 0.95 13 14 0.00093 0.065 13.8 4.3 1 23 599 621 599 621 0.98 14 14 0.023 1.6 9.4 2.8 1 23 635 658 635 658 0.96
Sequence Information
- Coding Sequence
- ATGGATTTGGGAATCGAGACAGTGGAAATCAAACAAGAAGTTGAAGAACATTATGGAAATGATTCAGTAGTGTGTTCAGTAGTGCATATAAAATTGGAGCAGTCATATTCCAAAGAATGTGAGGGAATTCAAACAGAGCCAATTACAGATGAGGGTGAAGCAAATTTGGCCATAGAAGCAGTTGACATAGAAAGAATTAAGGATCAGCCAGCAGTGGTAATTAAAAGTGAAAAACTGGAAGAACAACCTGGCATCAATTACAAAGAATTTCACACTTCAGGTTTTGATCCAGATTTGAACATCAAAGCTGAGTATGATTTAGAAACAAAATCAGATCCAGCAATGGTTAGGATGAAGGCCGGACAGAATGTACAAAGCTGGGATGAAGCTAATTTGACCTCAGATGAAGTTGGACAGATAAATTTAGAGGACTTTCCAGCACTTAAGGTTGAGGAACTGGAGCTTAAGGAAGAATTAAACATCAAACCAGAGACTATAGACACACTATCAAATTCATTATTCAATAGaacgGCGAAAACGAAAATGCTGGGAAAAGAACATATCGGAACTGAGATAGGGTTATTAATTTGTGATAATTGTAACAATACGTTTAGCTCTAGAACCGCTTTAATCAATCACATGTGtactggaaaaattaatttgaaaatcggttcaggAAGAAGAAAGCTGGTTCATAGAAGGCAACGTCCATCCTATTCATTCCTTTGTACTCATTGCAATGTAGCCTTCACACGGAAAGACACTTTCCATGATCATATCATCAAAAAGCATAAGGAGTTTGTGGCGTTAGTTACATCCAAAATACATGAATGTAtacattgtaaatataaaactgCTAGGAAAAATAAGTTAGCCAAGCACATGCTGAAACATGCAACTTTGACATTCAGTATATGTGAATATTGCAATGCGTCGTACAAAAGAAAGGAAACCCTTGATGACCATATAATTAGACACCACCCAGAAATCAAGACATCCATTAAAAGAAAATTGCATGAATGTCCGCAGTGCGATTACAAAACTACCAGAAAGTACAGTCTGACTATGCATATGCTGGTACATCCTGGTACAAAGTCTGAGCTAGGGACTTGTAAATATTGCAACGAGTCGTTTAAAGGTAAAACTAGCCTTGATAACCATATAATTAAAAGCCATCCAGATTTTATCACGTCCATTAAAAGGAAAATACATGAATGTAAGGAATGTAATTACAAAACTACCAGGAAAAATGCTTTAGACAGACATACGTTGACGCATTCTGGTGCGGCCTCTAAGATCCTCGTATGCGAACATTGCAATGCGACGTTCAAAAGAGAAGAAACTCTTGATAACCATATATTTAAAAaccatccaaattttatttcatcgaTTAAAAGGAAGATACTTCAATGTCCGCGGTGCAGTTACAAAACTACTGTGAAGAATACGCTGAGGAGGCACATAGTAGCACATTCTAAGGAAGCCGCTACGTTGAGCGTATGCCAAGAATGTAATGCTTCCTTTAAACATAGAGTGAGCCTTCATGACCACATATTGAAAAAACATCCAGATTTGATGGCATCGATTGAAAGGAAGATGCATGAATGCACCCAGTGCGATTACAAAACCGTCAAGAAGCATCATCTAACCAAGCACATGTTAAAACATGACGGTATGGCGTTCACACCGTGTATATGTGAACATTGCCATGCCTCATTTAAATCAAAAGAAACTCTTGAGAGTCATATTTTAAGAATCCATCCAAATTTCGTGGAATCTATCAAAAGTAAGATACATGAATGCACCCAATGTAATTACAGAACTATCAAAAAGTATACTCTAACCCGGCATTTGTTAACACAtcctacaacaaattttgagtCATCAATCGAAAGGAAAATACATCGATGTGAGCTGTGTAGTTACAGATCTACTCTCAAGAATAATGTGAACAGACATATTAGATTAACACACCCTAGTATGGAATTGGAGAAAACATTGTAA
- Protein Sequence
- MDLGIETVEIKQEVEEHYGNDSVVCSVVHIKLEQSYSKECEGIQTEPITDEGEANLAIEAVDIERIKDQPAVVIKSEKLEEQPGINYKEFHTSGFDPDLNIKAEYDLETKSDPAMVRMKAGQNVQSWDEANLTSDEVGQINLEDFPALKVEELELKEELNIKPETIDTLSNSLFNRTAKTKMLGKEHIGTEIGLLICDNCNNTFSSRTALINHMCTGKINLKIGSGRRKLVHRRQRPSYSFLCTHCNVAFTRKDTFHDHIIKKHKEFVALVTSKIHECIHCKYKTARKNKLAKHMLKHATLTFSICEYCNASYKRKETLDDHIIRHHPEIKTSIKRKLHECPQCDYKTTRKYSLTMHMLVHPGTKSELGTCKYCNESFKGKTSLDNHIIKSHPDFITSIKRKIHECKECNYKTTRKNALDRHTLTHSGAASKILVCEHCNATFKREETLDNHIFKNHPNFISSIKRKILQCPRCSYKTTVKNTLRRHIVAHSKEAATLSVCQECNASFKHRVSLHDHILKKHPDLMASIERKMHECTQCDYKTVKKHHLTKHMLKHDGMAFTPCICEHCHASFKSKETLESHILRIHPNFVESIKSKIHECTQCNYRTIKKYTLTRHLLTHPTTNFESSIERKIHRCELCSYRSTLKNNVNRHIRLTHPSMELEKTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -