Cmac015897.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Callosobruchus maculatus
Gene Symbol
-
Assembly
GCA_900659725.1
Location
CAACVG010011026.1:37181-42509[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0012 0.088 13.4 2.2 1 23 81 103 81 103 0.97
2 15 6.5e-07 4.6e-05 23.8 1.2 1 23 112 134 112 134 0.99
3 15 0.0036 0.26 12.0 1.4 1 23 142 164 142 164 0.99
4 15 0.00014 0.0098 16.4 3.9 1 23 173 195 173 195 0.98
5 15 0.14 9.6 7.0 5.2 1 23 204 226 204 226 0.98
6 15 0.0023 0.16 12.6 4.6 1 23 235 257 235 257 0.99
7 15 0.0075 0.53 11.0 3.2 1 23 266 288 266 288 0.99
8 15 6.3e-05 0.0044 17.5 1.8 1 23 297 319 297 319 0.98
9 15 0.0014 0.098 13.3 5.1 1 23 328 350 328 350 0.99
10 15 0.00011 0.0075 16.8 2.2 1 23 359 381 359 381 0.98
11 15 7.7e-05 0.0054 17.2 2.8 1 23 390 412 390 412 0.98
12 15 0.0058 0.41 11.3 6.3 1 23 421 443 421 443 0.97
13 15 0.002 0.14 12.7 5.3 1 23 452 474 452 474 0.99
14 15 0.022 1.5 9.5 8.3 1 23 483 505 483 505 0.98
15 15 0.007 0.49 11.1 1.8 1 23 514 536 514 536 0.98

Sequence Information

Coding Sequence
ATGGGTCCGCAGCTAATTGTGTGCTTATCAAATATTGACATCCACGATGCTGCTATTAAAAATTATCCAGATAACCAGAGCAGCGAAACTTCTCATAACACGTCCAGCACTCCgaaATGTGTGGATCAGCAGTTTATGTTGGAGGGACCAAAATATGAGCCTGGGTCATATGGAACAAAAGATGTTGTGAAGCTCAATAGGCTTTCTTCCACTAATACTGGTGAAGGTGCAAAAATCCATTATAAGTGTGAACTGTGTGACTATAAAACCCATCTCAAGAGCGCATTAAAGCGTCATCAAGTAGTACATGATGTAGAGGCGACTACTAGGAAGTATAAGTGTGAGCAGTGTGATtttaaatttatacaaaaaGCTAGTTTAAATAGACATATATTAACTCATGTAGATGGGATTTATAAGAAATACAGGTGTGAATTGTGTGACTATAAGTCTGATGTAAAGTCTCGTTTGAATAATCATAAATTAACTCATGATGTAGATGGGATTTataagaaatacaagtgtgaactgtgtgattataaaacccattacaaatctAATTTAAAGAACCATCAATTAGTACATGCTGCAGAGGGAACTGATAAAAAGTTCAAGTGTGAACAGTGTGATTTTCAGAACAATCATAAGGGTAATTTTAATAAACACAAATTAACTCATGATGTAAAGGGGATTTataagaaatacaagtgtgaaTTGTGTGATTATAAATCCTGTTATAAGATCAGTTTAAATAGACATAAATTAACTCACGATATACAAgggatttataaaaaatacaagtgTGAATTGTGTGGTTATAAATCTCATCTAAAGTGGagtttaaataaacataaattaacTCATGATACACAAGGGATTTATAAGAAATTCAAGTGTGACTTGTGTGACTATAAATCTGATCGAAAGTCTGGTTTAAATAGACATAAATTAACTCATGATTCACAGGGGATTTataagaaatacaagtgtgaaCAGTGTGATTATAAATCCTGTTTTAAGGGCAGTTTAAATAGACATAAATTAACTCATGATGTAGATGGGATTGataagaaatacaagtgtgaaCTGTGTGACTATAAAACCTATTTTAAGAGCCAGTTAAAGCAACATCAAATAGTACATGATGTACAGGCAATTAataagaaatacaagtgtgaaGTGTGTGATTATAAAAGCCATCGGAAGGCCAGCTTAAAGCGTCATCAATTAGTACATGATGTACAGGCAATTAataagaaatacaagtgtgaaGTGTGTGATTATAAAACCCATTACAAGAGCCATTTTAAGCAACATCAAGTAGTACATGATGTACAGGCAATTAataagaaatacaagtgtgaaCTGTGTGATTATAAATCCTGTTTTAAGAGCAGTTTAAATACACATAAATTAACTCATGATGTAGATGGGATTGataagaaatacaagtgtgaaCTGTGTGACTATAAATCTCATCGAAAGTGTCATTTAAAGCAACATCAAATAGTACATGATGTACAGGCAATTAataagaaatacaagtgtgaGCTGTGTGATTATAAATCTCAACGAAAGGATCGTTTAAAGTTGCATAAATTAATACATGATAAGAAGATGGTACAAATGTGA
Protein Sequence
MGPQLIVCLSNIDIHDAAIKNYPDNQSSETSHNTSSTPKCVDQQFMLEGPKYEPGSYGTKDVVKLNRLSSTNTGEGAKIHYKCELCDYKTHLKSALKRHQVVHDVEATTRKYKCEQCDFKFIQKASLNRHILTHVDGIYKKYRCELCDYKSDVKSRLNNHKLTHDVDGIYKKYKCELCDYKTHYKSNLKNHQLVHAAEGTDKKFKCEQCDFQNNHKGNFNKHKLTHDVKGIYKKYKCELCDYKSCYKISLNRHKLTHDIQGIYKKYKCELCGYKSHLKWSLNKHKLTHDTQGIYKKFKCDLCDYKSDRKSGLNRHKLTHDSQGIYKKYKCEQCDYKSCFKGSLNRHKLTHDVDGIDKKYKCELCDYKTYFKSQLKQHQIVHDVQAINKKYKCEVCDYKSHRKASLKRHQLVHDVQAINKKYKCEVCDYKTHYKSHFKQHQVVHDVQAINKKYKCELCDYKSCFKSSLNTHKLTHDVDGIDKKYKCELCDYKSHRKCHLKQHQIVHDVQAINKKYKCELCDYKSQRKDRLKLHKLIHDKKMVQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-