Cmac003290.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Callosobruchus maculatus
Gene Symbol
-
Assembly
GCA_900659725.1
Location
CAACVG010004413.1:9521-27588[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.2 14 6.5 5.1 1 23 279 301 279 301 0.98
2 13 2.5 1.7e+02 3.0 0.1 1 21 306 328 306 332 0.88
3 13 0.0017 0.12 13.0 2.3 2 23 385 407 385 407 0.96
4 13 3.8e-06 0.00027 21.3 3.8 1 23 413 435 413 435 0.99
5 13 0.00026 0.018 15.6 2.8 1 23 446 469 446 469 0.96
6 13 3.8e-05 0.0027 18.2 2.6 1 23 475 497 475 497 0.98
7 13 9.5e-06 0.00067 20.1 0.3 1 23 503 525 503 525 0.97
8 13 7.2e-06 0.00051 20.5 1.4 1 23 531 553 531 553 0.98
9 13 2.4e-07 1.7e-05 25.1 0.9 1 23 559 581 559 581 0.99
10 13 0.0052 0.37 11.5 5.4 1 23 587 609 587 609 0.96
11 13 0.11 7.6 7.3 0.2 2 23 616 637 615 637 0.95
12 13 0.00014 0.0098 16.4 0.3 2 23 644 666 643 666 0.95
13 13 1.3e-06 9.3e-05 22.8 4.0 1 23 672 694 672 694 0.97

Sequence Information

Coding Sequence
ATGGAGGATACAACAAAACTGTGCGACTCAAATTATTGCAGGCTTTGTggagaaaaaaacgaaaatggaACACCAATATTCCAatctaaagaaaataatttagaTTTAAGTCAACTTATCAACAAATATTTGCCCATTACGGTTGAAGATGACAAAAAGTTCCCCAGTTCGATATGTCCAGGATGCCACATTCAACTGGAGGCGACCAAACTGTTCATGGATTTGATAGTGGAGGGCCAAGCTAAATTGAGGTATTTGTACAGCTTACAACAAAAAGCTTTGAAGCAACAGGAGGACCAGGCAAAGCAACTGCTTCAGGGAGTGTTGATCCTCAACGATGATGGAACGATTCAACCATATGAAGATGCAGATGGAAACCAGCTCCTTATTCAAGTGCTTCCAGATAAGCTTTATCCAACTGATCATCAGCTGTCATTGAAAGCAGAAGGCTTAGAAAAGCCAAAAAGACGAAGAGGTAGACCTCCAAAAACACAAGCTCCACCtgtagaaaaagaaaaagaaattgtTGAAAGTAAATCTACCACAGAGGCTGAAAAAGAACCGTCAAATGATGATGGTGTTCGTCAGCGAAGAAAGGTCAAAGCACCTGCAAGATTTGTGGGAGTTGTAGAGGGTGAAGAGTTGGAGAATTTATTGAAAGAAGAAGGTGTTATAGAAAAAGAAGATGCTCCTGTAACTCCTGTTACTGAAGTCATTGGGAAACTGGTTAATATTAATGGAGAAGCACTTGAGGAGGATGTCGTTATAActcagaaacagaaaacaaggcTAGAACTTGGTACAGTCAGAGATAAGAAGCGAGCTAAAGTAAAATACCGATGTGATCTGTGTACCAACAGTTATTCATCTTATGTAAGATATCAGCATCACAGGAAATCACACAAAATACTATACTACATTTGTAGAGAAGAAGGGTGTGAGTACAAAACCGAGCAGCCTGAGGATGTTGAGAGGCATAAGAATGAGACAGGGCATGCTGATGTACTCGCACAAATTGTTGTCAGCCTTTTAgaCCAGGTGCCCCAATTGGCTAATGAGAAGAATGAGAATGGACCCTCAAAAATCAGTGAGGAACAGAATAAAACTACTCAAGTAGATACGGAACCTAGCAAACCGAACATTCCAAAGAATACATGTGCAACATGTGGGAAAACCTTCCGCTGCAAGCAAAATCTAGAGGTACATGAAAGATCTATACATAAGATGGTTCGATCGTACAAGTGCCGCCATTGTGATCGGTCATTTTCCTACGCGAACAGTTTGAAGAGTCACATGGTGACCCACGCTGCCATAATAGGGGATCGTTTAACCCAGCACATGTGCAATTTGTGCAATAAAGGGTTCATACACCAAAGCAGCTTGATTTACCATAAAGAGACTGCTCACAATACCGGTAATATATTCGTATGTGTCAAGTGTGGCAAGCGTTTCAATCACAGGCAGAGGTTGATACGACATCAGTTAGTCCACACTGATACACGACCTTTTGTGTGTCAAGAATGCAACGCGAGCTTCAAGACGCGAGCTACCTTGAAAAACCATCTGGCAGTTCACAGAGGGGAGAAGAGGTTTACTTGTAAGATATGCGGACAGAAATTCGCGCACAAaaCATCACTGATTGTGCACGAGCGTTGGCACGAAGGTAGGAAACCTTTCAAATGCGAGATTTGCAAGAAAGACTTCGCCCAGAAGGGAAACCTGCTAGAACACCAACGGACGCATACAGGAGAAAAGCCTTTCTGTTGCGACGTGTGCGGAAGGAAGTTCACCACCTCGTCACAATTTAGCTTTCATCGGATGAGGCATACAGGAGTAAGACCTTGGAGCTGTTCCTATTGCCCGAGGAACTTTTTAATTAAGGCTGCTCTGGATACACACGTCCGTCGCCATTTTGATGAAAAACCGGTACGTTGTCCGGTCTGCCCAATGAGCTTCGTCGACAAGACTAGTATGATGAGACACAGAAAGGCGCAGCATTCAAAGgaacCCCCTCATATTTGCCCGCGCTGCGGTAAGAAGTTCAAAGATAAAAGCAACTACTTGAAGCATACAAGGATGCACGATAGAAAAGACAGAATTGCGGAAGAAACTACAGGAATCGAGCAACAAACTGAGGCTGATCCCATGGACTTCAACGAATCTGTAGCTGTTGGGACTCTTGGAAATAGTGATCAGAGCAATGACTCCATTCTCCGATTAACTCAAGTAGTGGACGAACAAGGGATTCCCATAAGCATCAAAACGCAAGATGGTCTATCGATCCCGATAGTAACCGGAAATGACGAGAATCGAGTTCACGGACTGTTGCCTGATGGTACTTTGGTACCGATAGAACTCAACGATTTGGAGGATAAGGCTGTCGAGGAAATTGTAATCAACAACACCGACGAAGAGCCTGCCCTGGAAGGCCCCATCAGCATTTTGACGCAAGATTTAGATACCCAGCCGCTGGATACGAACATTCAACTTATGACCAACGAAGACGGCCAAGAAATGTGTTTATTAACTTATTCTGTTGATAGTGTAACAAATAGTGAAGAAATCAACCAACCATTCACGTTAGAATCGTTGTTAAGTAGTAGTGATAAAGTGATCGGTATCAATAAGATATAA
Protein Sequence
MEDTTKLCDSNYCRLCGEKNENGTPIFQSKENNLDLSQLINKYLPITVEDDKKFPSSICPGCHIQLEATKLFMDLIVEGQAKLRYLYSLQQKALKQQEDQAKQLLQGVLILNDDGTIQPYEDADGNQLLIQVLPDKLYPTDHQLSLKAEGLEKPKRRRGRPPKTQAPPVEKEKEIVESKSTTEAEKEPSNDDGVRQRRKVKAPARFVGVVEGEELENLLKEEGVIEKEDAPVTPVTEVIGKLVNINGEALEEDVVITQKQKTRLELGTVRDKKRAKVKYRCDLCTNSYSSYVRYQHHRKSHKILYYICREEGCEYKTEQPEDVERHKNETGHADVLAQIVVSLLDQVPQLANEKNENGPSKISEEQNKTTQVDTEPSKPNIPKNTCATCGKTFRCKQNLEVHERSIHKMVRSYKCRHCDRSFSYANSLKSHMVTHAAIIGDRLTQHMCNLCNKGFIHQSSLIYHKETAHNTGNIFVCVKCGKRFNHRQRLIRHQLVHTDTRPFVCQECNASFKTRATLKNHLAVHRGEKRFTCKICGQKFAHKTSLIVHERWHEGRKPFKCEICKKDFAQKGNLLEHQRTHTGEKPFCCDVCGRKFTTSSQFSFHRMRHTGVRPWSCSYCPRNFLIKAALDTHVRRHFDEKPVRCPVCPMSFVDKTSMMRHRKAQHSKEPPHICPRCGKKFKDKSNYLKHTRMHDRKDRIAEETTGIEQQTEADPMDFNESVAVGTLGNSDQSNDSILRLTQVVDEQGIPISIKTQDGLSIPIVTGNDENRVHGLLPDGTLVPIELNDLEDKAVEEIVINNTDEEPALEGPISILTQDLDTQPLDTNIQLMTNEDGQEMCLLTYSVDSVTNSEEINQPFTLESLLSSSDKVIGINKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-