Cmac008154.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010007510.1:143957-154027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.1 78 4.1 0.3 2 23 5 28 4 28 0.91 2 14 9.2e-07 6.5e-05 23.3 2.0 1 21 36 56 36 57 0.94 3 14 0.0005 0.035 14.7 0.2 1 23 65 87 65 87 0.98 4 14 0.002 0.14 12.8 0.3 1 23 93 115 93 115 0.98 5 14 2.3e-05 0.0016 18.8 2.8 1 23 121 143 121 143 0.97 6 14 0.00018 0.013 16.1 3.0 1 23 149 171 149 171 0.99 7 14 0.00089 0.063 13.9 2.2 2 23 344 365 343 365 0.95 8 14 0.27 19 6.1 2.6 1 23 379 402 379 402 0.95 9 14 4.5e-05 0.0031 18.0 1.0 2 23 407 429 406 429 0.94 10 14 2.3e-07 1.7e-05 25.1 0.2 1 22 439 460 439 460 0.96 11 14 1.2e-06 8.3e-05 22.9 5.6 1 23 468 490 468 490 0.98 12 14 0.0024 0.17 12.5 2.1 1 23 496 518 496 518 0.98 13 14 0.018 1.3 9.8 0.7 1 23 524 546 524 546 0.94 14 14 0.29 21 6.0 4.1 1 23 552 574 552 574 0.97
Sequence Information
- Coding Sequence
- ATGAAAGTAAAAAAGTGCAGAGTATGTCCAGAACTCCAGTTTACAACAGAAAAGGAATACCTTTTGCACATACGAGATGAACATGAAGGTAAAATAATTGACTGTCACATGTGCAATGTTTGTGGCAAAACATTCAAGACACATAGCGAATTGACACAGCATATCAAATCAAAATGTGGCACAGAAAGGAGGTTTATTTGCAAGgagtgtggtcaaagtttgATGTCGGCAGGATCTTTGTACAATCATGTAAAACGTCACCAGAAAACCCACAGTTACATGTGTCGATTCTGTGCAAAAATGTTTGTCACTGGAGGTCAGCTAAAAGTGCATGAAAAGGTTCATACCCAGCAGAAGGACTTTGtttgtgagATATGCAACAAAGGTTTCTGTCATCGTCAGAGCCTGATAACACATATCACAATCCACACTGGGATCAAACCATATCAATGTGAGGGGTGTAGTAAATCCTTCAGTTGTGTTGGGAATCTTCTGAAGCATAGAAAGACTCATGAAGATACATGTGGATTGGTGCCAATGACTAGTCATCGAGTGAAGAATCCATCAACTAAGATAAAGGTGAGAATAAATACTCCAGCTTCATCACGTTTGAAACAAAATAAGATGAGAAGAGAGCTTAAAAAGAAATTAGAAATGCTAGACAAGGAATTTGACCAAAATGTAGTTAAATCTGGTCATACTACCAAAAATTGCATGGAAGAGAGAAATAACCTTCATGAAGCTAATAGACCTAGGGATGTTAACGAGACTGAAGAAAAATGCATAGAAGTAACTCAGCAAGAATTTTGTTGTGAAGAAGATAATTCAGTAATGGAAAATACGCAAGCAACAAAATGTGATAATATTGATAATGGTGTAACTTTGGGGGAAGCAAAGCATCTAAGTAATGGAAGCCTATGTGAAGCCAAAGAGAacaaaaagcataaaaatagTAAAGAAAAGGAATCGCTGAAATTAGAACTGGAACGTTTTGTTGAAGATAGAAAGCTTGTTCCAGGATCAGTGACGAAATGCAAATATTGTAGCAAAGAGTACACCAACTTCAAATGGTTGTTTAGGCACGAAAATGCACATGAACAAAATAAAGGAAATGCCAATTTGAATGAGCTCAGTTTTAAGTGCAGTTGCTGTCAGGCAAAGTTTGATACCAAGGAAGCAGTTAAACAGCACCAGTCACAAGCTCATGCTGATGTTCTTACTTGTGGTCATTGCTCCAAGCCATTCTCCAACGTGGATTCGCTACGCTCCCACATCAAAGCCTTCCACAAAGGGCAACCTCGCAAGCCTTACACTTACGTGTGCCAGAAGTGCGGAAAGACCTTCAAACAAAAGGCTCTTCTAGAAGCCCACATGAGTACAGACTGCGACAGTGAATCCCGCTTCATGTGCCACGTGTGCAACAAAAGCTTCTCTACTCGACACACGCTCTGGAGCCACATGAGGCTCCACGTGGCTGAGAAGGGCTTCAAATGCGGCTTTTGCGACAAAGGGTTCCACTGGAAGGGACAGTTGAAGGTGCATGAGAGGTCGCACACTGGAGAGAAGCCTTACACCTGCCTATTTTGCCCCAGTTCCTTTGCATATAGggaCAGTTTGGTTACGCATAGCACCCTCCACACTGGTCTGAAGCCCTACGTCTGTAAATGCTGTGGATGGAGATTCTCGTGCGTTGGAAACCTCGTAAAGCACAAGAGCACCCATGGTCTCACCTGTGGCATGTGGTATAAAGAAAACGAAGAAGACTGA
- Protein Sequence
- MKVKKCRVCPELQFTTEKEYLLHIRDEHEGKIIDCHMCNVCGKTFKTHSELTQHIKSKCGTERRFICKECGQSLMSAGSLYNHVKRHQKTHSYMCRFCAKMFVTGGQLKVHEKVHTQQKDFVCEICNKGFCHRQSLITHITIHTGIKPYQCEGCSKSFSCVGNLLKHRKTHEDTCGLVPMTSHRVKNPSTKIKVRINTPASSRLKQNKMRRELKKKLEMLDKEFDQNVVKSGHTTKNCMEERNNLHEANRPRDVNETEEKCIEVTQQEFCCEEDNSVMENTQATKCDNIDNGVTLGEAKHLSNGSLCEAKENKKHKNSKEKESLKLELERFVEDRKLVPGSVTKCKYCSKEYTNFKWLFRHENAHEQNKGNANLNELSFKCSCCQAKFDTKEAVKQHQSQAHADVLTCGHCSKPFSNVDSLRSHIKAFHKGQPRKPYTYVCQKCGKTFKQKALLEAHMSTDCDSESRFMCHVCNKSFSTRHTLWSHMRLHVAEKGFKCGFCDKGFHWKGQLKVHERSHTGEKPYTCLFCPSSFAYRDSLVTHSTLHTGLKPYVCKCCGWRFSCVGNLVKHKSTHGLTCGMWYKENEED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -