Cmac017288.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010011926.1:316657-324562[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.4 6.6e+02 1.2 0.6 8 21 106 119 105 120 0.85 2 15 0.004 0.28 11.8 0.2 2 20 139 157 139 159 0.92 3 15 0.081 5.7 7.7 2.5 1 22 173 194 173 194 0.91 4 15 0.00065 0.046 14.3 3.0 1 22 205 226 205 226 0.97 5 15 0.0031 0.22 12.2 0.3 3 23 240 261 239 261 0.93 6 15 7.3e-06 0.00051 20.4 2.0 2 23 265 287 264 287 0.96 7 15 0.026 1.9 9.2 1.9 1 19 296 314 296 319 0.93 8 15 5.3e-06 0.00037 20.9 2.7 1 23 329 351 329 351 0.98 9 15 8.9e-06 0.00062 20.2 0.5 3 23 359 379 358 379 0.97 10 15 7.9e-07 5.6e-05 23.5 0.8 1 23 385 408 385 408 0.96 11 15 0.0064 0.45 11.2 3.7 1 23 416 438 416 438 0.97 12 15 9e-07 6.4e-05 23.3 1.2 1 23 444 466 444 466 0.97 13 15 4.1e-06 0.00029 21.2 1.4 1 23 472 495 472 495 0.98 14 15 0.002 0.14 12.8 5.3 1 23 509 531 509 531 0.98 15 15 2.4e-05 0.0017 18.8 1.5 1 23 537 560 537 560 0.95
Sequence Information
- Coding Sequence
- ATGAACACTTTATATTGTGATATATGCAATGAAGAACGCAAGACGGTATTAAAAGCATCTGTGGAAGACAATAACTCTATCGATTATGTGAGCAAATTAGAGAGCATAGCTCCAGAACTGGACTGGTCAGCGAACACAAAAATATGTACTGTTTGTATAAATGATCTAGAAATTGCATATAGATTCAAACAGGTATGTTTGAAATCTGACAATCTAAGAAAGATCACAAAGTATGATGCAGATACCAGTGAACATGATGACACTGATCCTCTAAATCTAAATTATACTATTCCCTTTGACAGTAGTAATTCCAACACAAATTTTCATACTCAAGAACATCTGGAGCtacatttaaatcaaaaaagctGTGATGATAATGTTGGAAAGGATCAAAAAAAGTATGAAAGAATGGAGGAATGTTTAAAATGTGGTAGAAGATTTGCTTTGACTTCATCATTAGAGAAACATGAATTGTCTTGTGATGGAATAATCCGCCATCGAAAAGTATTTAACAAGCATCAGTGTGACAAATGCAAGAAATTTTATACAACATTGAAAATATTATCAGCTCATAAGAAAACATGCAAATCAGAAACTATCAAGAAAACTGAATATCAGTGTGAAAAATGTCACACATATTATGTTAGTCAAAAGACATTGAAAGATCACCAGAGAAGAGGATGTAAAGTGGATTTAGAAGATAGTAGTGAAAAAATTTGTGATATATGTAGCAAACTGTTCTCATCTGATTTTTTGCTTAAAAAGCATATAGCAGAATTTCATAAGATGTGTAAATGTGAGGATTGTGGTATTTCATTTACAGATTATAAGGAATTCATGGTGCATATGAAATCTCAACATGTAAAAATGAACTTGTCTAGGAAGTTCACTTGTGAAATTTGTACAGAATCTTTTAGTCTATTGAAAACTCTTCTTCAGCATTGTGAGCAGTCCCATTCTATGGATATGAAGTGTATTAAGCCTTACCAGTGTGATATTTGTAACCATAGGTTTGCTTCTTCATCTAACTTAATGAATCATAAAATGTATCACAATGGCCTCAGGCCAAATATATGCAGTTTCTGTGGAAAaagtttcataacaaaaaatGATCTTACGATTCATGAAAAGATACATTTTGGTGAAAGAAACTTTGAATGTAATAAATGTAGCAAAGCTTTCAAAACAAATGCTAATTTAAGAACCCATTATCTTGTTGCCCATACAGATTCATCTTTGTGGAAGTATGTCTGTTATCTGTGTAATAAACGCTTCCCACAAAAATCAAACCATGACCAACATGTAAAAAGGCATACAGGAGAAAAgaattttatttgttctttATGTACAAAGACTTTCACAAGCAAAAGTGAGCTACTAGAACACATAAGATATCACTCAAATGAAAGAGCTTTCAAATGCGAAGTTTGTGGTAAAgcttatagaaaaaaatattcatataacatCCACTTAAAGAAAGCTCATAGTATTGGAAATGCCAAAACTGCAGTAAGGGAGAAGAAGTATGCTTGCCATATTTGCCCTGGAAAGTTTCATGATAAGCCAAAGCTTACTAGGCATTTATGCACACATTCAGGAATAAAACCTTTTGCATGTTCTTTTTGTGAGAAAAGGTTCACTGATAAGTCTTACCTAAACCTACATGTAAAATTGAATCACagtgaaacttaa
- Protein Sequence
- MNTLYCDICNEERKTVLKASVEDNNSIDYVSKLESIAPELDWSANTKICTVCINDLEIAYRFKQVCLKSDNLRKITKYDADTSEHDDTDPLNLNYTIPFDSSNSNTNFHTQEHLELHLNQKSCDDNVGKDQKKYERMEECLKCGRRFALTSSLEKHELSCDGIIRHRKVFNKHQCDKCKKFYTTLKILSAHKKTCKSETIKKTEYQCEKCHTYYVSQKTLKDHQRRGCKVDLEDSSEKICDICSKLFSSDFLLKKHIAEFHKMCKCEDCGISFTDYKEFMVHMKSQHVKMNLSRKFTCEICTESFSLLKTLLQHCEQSHSMDMKCIKPYQCDICNHRFASSSNLMNHKMYHNGLRPNICSFCGKSFITKNDLTIHEKIHFGERNFECNKCSKAFKTNANLRTHYLVAHTDSSLWKYVCYLCNKRFPQKSNHDQHVKRHTGEKNFICSLCTKTFTSKSELLEHIRYHSNERAFKCEVCGKAYRKKYSYNIHLKKAHSIGNAKTAVREKKYACHICPGKFHDKPKLTRHLCTHSGIKPFACSFCEKRFTDKSYLNLHVKLNHSET
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -