Cmac013818.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010009844.1:4225-77651[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0007 0.049 14.2 1.7 2 23 111 133 111 133 0.95 2 20 0.065 4.6 8.0 1.0 1 19 333 351 333 353 0.97 3 20 0.081 5.7 7.7 3.6 1 23 383 406 383 406 0.92 4 20 0.66 47 4.8 0.2 1 20 439 458 439 462 0.89 5 20 0.00036 0.026 15.1 2.0 3 23 551 571 550 571 0.97 6 20 0.034 2.4 8.9 0.1 1 23 585 607 585 607 0.93 7 20 0.0018 0.13 12.9 0.4 3 23 612 632 610 632 0.96 8 20 0.00057 0.04 14.5 1.7 3 23 662 682 661 682 0.98 9 20 0.072 5.1 7.9 1.7 2 23 706 728 705 728 0.94 10 20 2 1.4e+02 3.3 0.2 2 23 743 764 742 764 0.85 11 20 2.7e-07 1.9e-05 25.0 5.3 1 23 796 818 796 818 0.98 12 20 0.064 4.5 8.0 0.1 1 23 822 845 822 845 0.96 13 20 0.0082 0.58 10.8 0.1 1 23 872 894 872 894 0.96 14 20 0.0046 0.32 11.6 1.0 3 23 909 930 908 930 0.95 15 20 0.00029 0.02 15.4 0.6 1 23 950 972 950 972 0.95 16 20 0.011 0.79 10.4 0.4 1 23 1008 1031 1008 1031 0.95 17 20 0.0051 0.36 11.5 1.7 2 23 1042 1063 1042 1063 0.94 18 20 1.9e-05 0.0014 19.1 1.2 1 23 1095 1117 1095 1118 0.95 19 20 1.2e-05 0.00082 19.8 1.8 1 23 1126 1148 1126 1148 0.99 20 20 0.00086 0.06 13.9 0.1 1 23 1162 1185 1162 1185 0.96
Sequence Information
- Coding Sequence
- ATGGTGAACAAATGGCACGAATACAAACAAAAATGCGTACAGAACCAATCCAAATTGCGACGCGTCATGACGAAGTCAATGGTACAGGAACGAGAAGAACAACACTGTACATCTATTGCAAATATGAGTATTCAAATAAAAGAAGAACCACTGGATAACGATGAAAACTCACTTAGTAATATTCGTATCAAGTCTGAACCAGTCGATGTAGATGAAACAATGAATGGAGAATATAACGAATTTCCCCCAGCACTTTCACCTCAAATGCCTGAGCATGTGGAAACAGATATACAAAATGGTAATGTTGCATATATAAACGACAACGAGAGGAGATGTAGGTACTGCGACAAAATATTCAGCAATATATCTAACAGAAAGAAGCACGAAAGGGGAATGCATCAACCTAACGAACCATACGCAAGGAGATCAATGTGTGAAATTTCAGCGAAGAAAGCCCAACAACAACTTGAACAAAGTTATCCATCAGAATCTGGTGAAAAGCCTGAAGACCAGTCAGAAGATCAGCAAACTAATCAAGCAAGCGAACAACTggttgaagaacaaaaagagCAATCAAGTGAAAACAATCACCAAACAGATCCAACTGAGGAACAATCTGAAGAAGCATTCGCAGAAaagattgcagaaaaaaatgcagaaaatcaTGCAGAAAATCATGTAGAAAATAATGCAGAGGAATCGTCACAGGAGCAGTCAACAATTGAAACAACTGAGGAGGCAACGAATTCTTCAGAACCAAAAGATGAAGCTGACCAACAGAAAATTTTGTTTGCTGCAGGTTTGAAGCTTTTGGAGAGCAACACCACACCAATATCCTGTGAGACACTGTCCAAGATAGAGCTCAGTTACGCAGAAAAGTGCAAAGCCATGGTCAAGATGCACAGAACGCTAGAATGTGCCTGCCACAACGTCAATCATCCAAATCTTAAAGGACTCTTGTCTCATTTGCGTTCTCTCCGCATTTGGTTTCCTGTGTTTACATGCTATAATTGCATGATCACCTTTACTGACAGATCCACGTTCACCAAGCACAACGTCAAGTGTCCCAGCGCTTCTCTTGACACACTTACTAAGTTGAGCAACCTGAGGAAGAGGAGCGAGGTGAAAGTGAGGTTGTACCAGAACTTCAAATGTACCAGCTGCAAGTTCATGTTCAGCTTCCACGAAGACTTCATGAAGCACGTAGACGAAGATCATTGCGCAGTTACTCTGCCGGTCCGATGCAGTTGCGAGAGAGAAATCGAAAATATAGAAGACTACAAAGATCACGTGTATCTCAGCTGCTTGGTGGAGTTCTACTGTGATATCTGTTTCGTTACCACCGACACCGTAGAGGAGTTCCAAAAGCACGCCGTGGAAAACCATGATGAGTCTGAGGGTTTTATACTGAAACAGGATGATGGGTACGCCATGCGCAAAGCAATGATGCAGTCTCCTCCCAAACCAAAGGAAACAGTAGACGAAAACGCTATCGTTACTGGTAAGAGAGAAAGAAGACCTCCTAAGCCCATGGACATAGCTGCATCTACTACTTCTAGCACATCGAGAACATCAAAAGAGAAGGACGAGTCTTACGTGAGTGTGTACGATCATCCTTACTCCATAACTCCGAGGTCGGGCAGCAAAGCGTGTCCTATCTGCAACAAGGAGTATTCTAGCTACCACAACATGATGAGGCACTTCAAGAGCCACAGCGAGGAGGAGATCAGCAAGTACGAGAACGAGTCCGTTTACGCTTGTCCGGATTGTGAAGAGATGTTCAGATTGCCCGAGTGGCGACAGCATTTGGTGACCAAACATCAGCCTACTGCTTGCGAGGAATGCGGCAGGACGTTCCAGTTCAGGACCGAGTTGGATCAGCATAGAAGCGTGCACTTGAACATCAAAGTGTATAGGGATTCCAAGACGCATTCGCTGAAAACTGCTATGATTAGTCCAGGGTCTGAGGTGATGATGCTGCTGTGCGAGATCTGCGAAGAAACATTCCACTCGAAGGAAGACCTGAAGCAGCATAAACTCACCCACTTCCAGAACCTGCAAAATGGCGGCATAAAGTCGGAGCCCATGGAGCAGGAGGATTCTCAAAAGACCTGGACATGCACCCCTTGCGATAAGACTTACCATACGTACAGCGGTCTCTGGGACCATAACAGAAGGAAACATACCGGCGAGGAGAAGTCCATCGCCAGCTCAGAGTACCCTAAACAGTGCAAGTACTGCGAGAAGGTGCTTCTCAGCGGTGCTGCCTATGCCAGACACAAGATGATCCACGAAAAAGATAGGATACCGACAGACGCTAACGCAAGAATGATGATGTACTCACAAGGGAGAAGAGGAGAAACTCCACCTCATGAAGAGACCTACCACACTTGCCCCCACTGCTCGAAGGTGTTTGGATCAAAGTCGAACTTGAAGAACCACATGAAGACCCACATGCAAGGCTACACTTGCGGAGTATGCAAAGACGTCTTCGCTACCACAGAGGCGCTGTTGCAGCATAATATGATGGAGCATCCTGGAGATGCAATGTCACTTTTAGAAACTGAGATAAAACAAGAACCAGAGGATGAACCTCTAGAGCCGTACATGGTTTATACCTGCGATGTATGTGTGGCCACTTTTGAGACGAGAGTCGAATTGGTGCAGCACAAGGAGCAACACGCCCCAGAAATGCGACCATCACCAGCTAGCAAGAACGTATTCTGCAAATACTGCAAGATTCCCTTCGATTCTGTGATGAACCTGGCCAAACATATGCACTTAGAGCACGGAGAATCCTCGAAACCGAAGGGGGTCAAGATCAAAGAGACGAATCCAGGGCGCAGGTTCGTCTGCACCATCTGCTCTAAGGCGTTCCATACCCAGAACGCGCTTTCCACTCACATCGGCTGGCACAGACGAGGAACTAACGATTCTAATACCAAAGTGTCCAAAGTCATACAACAGGTTGCCCGAGATATACCGAGAGCGGTTCCAGTCCGTGTCCAAAGCGCTCCGACATTCAGATGTCACACCTGTGCTGGGGAATTTCCCAACAACACGGCTCTTCAAGTTCACATCTTGGAAAAGCACAGGAGCGCCAATAGCATCGTCTTGGTGCCCAGATGCACGCCGTGCGACAAGGACTTCAAATCCCAAGAAGAGTACGAGAAACACAAGCGATTCCATGAGTTCTTGGACAGACAGAAACAAGCCGAACAACATGCgcttcaacaacaacagcaGCAAGAGATGTCAGTGCATAATACGTCTGGTAAAAATTTCCCTTGCAAATATTGCAACGCAGGGTTCAGTAGATCTGACACTCTGGGTATACACATGAGGCAACACCATAAGGAGTACGTACCGACTGAGTTCAAGTGCAACTACTGCGAAAGGGTATTCGACAAGCAGAATTCACTATCGATTCACCTGAAGACTCACGAGAAGCAGAGGCTGTCGAACGTTCCTTCGAAGCCGGTATTTTCGTGTTCCATATGCAACATGGGATTCGAAATGCCCAAAGATCTGCGCGCACACACGATTAGCGCGCATCCGTTTTGA
- Protein Sequence
- MVNKWHEYKQKCVQNQSKLRRVMTKSMVQEREEQHCTSIANMSIQIKEEPLDNDENSLSNIRIKSEPVDVDETMNGEYNEFPPALSPQMPEHVETDIQNGNVAYINDNERRCRYCDKIFSNISNRKKHERGMHQPNEPYARRSMCEISAKKAQQQLEQSYPSESGEKPEDQSEDQQTNQASEQLVEEQKEQSSENNHQTDPTEEQSEEAFAEKIAEKNAENHAENHVENNAEESSQEQSTIETTEEATNSSEPKDEADQQKILFAAGLKLLESNTTPISCETLSKIELSYAEKCKAMVKMHRTLECACHNVNHPNLKGLLSHLRSLRIWFPVFTCYNCMITFTDRSTFTKHNVKCPSASLDTLTKLSNLRKRSEVKVRLYQNFKCTSCKFMFSFHEDFMKHVDEDHCAVTLPVRCSCEREIENIEDYKDHVYLSCLVEFYCDICFVTTDTVEEFQKHAVENHDESEGFILKQDDGYAMRKAMMQSPPKPKETVDENAIVTGKRERRPPKPMDIAASTTSSTSRTSKEKDESYVSVYDHPYSITPRSGSKACPICNKEYSSYHNMMRHFKSHSEEEISKYENESVYACPDCEEMFRLPEWRQHLVTKHQPTACEECGRTFQFRTELDQHRSVHLNIKVYRDSKTHSLKTAMISPGSEVMMLLCEICEETFHSKEDLKQHKLTHFQNLQNGGIKSEPMEQEDSQKTWTCTPCDKTYHTYSGLWDHNRRKHTGEEKSIASSEYPKQCKYCEKVLLSGAAYARHKMIHEKDRIPTDANARMMMYSQGRRGETPPHEETYHTCPHCSKVFGSKSNLKNHMKTHMQGYTCGVCKDVFATTEALLQHNMMEHPGDAMSLLETEIKQEPEDEPLEPYMVYTCDVCVATFETRVELVQHKEQHAPEMRPSPASKNVFCKYCKIPFDSVMNLAKHMHLEHGESSKPKGVKIKETNPGRRFVCTICSKAFHTQNALSTHIGWHRRGTNDSNTKVSKVIQQVARDIPRAVPVRVQSAPTFRCHTCAGEFPNNTALQVHILEKHRSANSIVLVPRCTPCDKDFKSQEEYEKHKRFHEFLDRQKQAEQHALQQQQQQEMSVHNTSGKNFPCKYCNAGFSRSDTLGIHMRQHHKEYVPTEFKCNYCERVFDKQNSLSIHLKTHEKQRLSNVPSKPVFSCSICNMGFEMPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -