Cmac014999.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010010513.1:29290-52809[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00067 0.047 14.3 0.5 2 20 134 152 133 154 0.93 2 15 0.51 36 5.2 0.9 1 12 164 175 164 177 0.88 3 15 0.86 60 4.5 3.2 3 21 186 206 184 207 0.85 4 15 2.2e-05 0.0015 18.9 2.1 3 23 227 247 225 247 0.95 5 15 0.00011 0.0075 16.8 1.1 1 23 253 275 253 275 0.99 6 15 0.00013 0.0091 16.5 6.1 1 23 281 303 281 303 0.98 7 15 1.1e-05 0.00081 19.8 0.1 1 23 309 331 309 331 0.98 8 15 0.35 24 5.7 5.8 1 11 337 347 337 365 0.72 9 15 2.6e-05 0.0018 18.7 6.3 1 23 370 392 370 392 0.99 10 15 0.019 1.3 9.7 0.5 1 19 411 429 411 431 0.90 11 15 1.4e-05 0.00098 19.6 0.2 1 23 450 472 450 472 0.96 12 15 0.0015 0.1 13.2 0.6 1 23 478 500 478 500 0.95 13 15 1.2e-05 0.00087 19.7 5.0 1 23 506 528 506 528 0.98 14 15 7.8e-06 0.00055 20.4 0.0 1 23 534 556 534 556 0.98 15 15 4.7e-05 0.0033 17.9 1.9 1 23 562 584 562 584 0.98
Sequence Information
- Coding Sequence
- TTTTCTACTAAACAAATTCTATTTCAGTTGGACTTTGAGACATTGCCGCAAAATGTCTGCAGCTTATGTACAAATACTTTGGAGACCATTTTAGAATTTATAAATAGATCAAAATCAAGTGATGTATGCCTCAGGGAAATCTATGAGAACAGTAAGTTTGAAGTCGAAGAAGATGAAGCAGACGACTTCTTAGATGACAATGCGTTAGATCCAGATTGGGAATCCGAAGATGAAAAAGACAAGAAAACAATTGTTAAAGAAGAAGAGGTTACAGATGAAATAAAGGAGGAAGATGTCAGCGATACTTCAGTCAAATCTGAGAGAAGGCCACGCAAAAGGAGACGGAAAATCGTTAAACAGAAATCTGATTCTCCAGTCAAGGTGTCTTGCAGACCTGTGCAGTGCAACGTTTGCAATGTAACATTCAATCGTAGGAAAGAGTATAACAAACACAAAATGGAAAATCCTGAATGTAATCAAACTAAAGAATATGAGTGTGATACCTGTGGTATGAAGTTTCCCTATAGAAAACGCGATCTCCGTGCCAACACGGAATGCTACGTGTGCAGGTGTGGCAAGAAATTCTACAACCAGCAGTGCTACGAGCTACACACGCAACAGCCCTGCGAGGAGACGAAACATCGCAAGCCAAACCCCAATGCCATCAAAGAGCATCTATGCTCAATTTGCGGAAAGACATTCAGAGCCAAGAGCTTGCTGGAGCAGCATTTTAGGCTCCACACTGGCGAGAAGCCTTTTAAATGCGAGTATTGCGAAAAGTCGTTCAGGCTTATGCAGAAGATGGAGGAGCACATCAGAGTGCACACCGGGGAAAAACCTTATCAGTGTGAACGCTGTCACATGTCTTTCAGACAGAGAGCGCATTTGAAAACCCATTCGCTCACCCATACTGGAGAAAAACCTTATGCTTGCGGGATGTGTGGCAATAGGTTTGTTAGCGCGGGGAATATGAGGACTCACATGAGGATTCACACCGGGGAAACCCCTTACGTATGCCATGTGTGCGGGAAGAGTTTCCACGAAAAGAAATTTACAGCTGCTTATACAAAGAATGATCACATGAATAAACATACTGGAGCTAGGCCTTATGTGTGTAAGATATGTGGAGAATCTTTCCAGACGTTTTCACATTTCAGTCATCACAGAAGAACTCATGTGGAGCAGTATGTAGTTAAGAAGAAAATGGTATCCAACCAGCGAAACATGAACTTCCTTTGTCCTATTTGTGGGCGATCCTTCCTTTCCAAGTACTATTTCGACAAGCACTCGGTGATGCCATGCGAGAAGAAGATCAAGGAGAAAGGGTCAGTACGGCAGTCTAAGGACTACCTCTGTTCCACCTGCGGAAAGACCTTCATTGCGCCCAGCTATCTGGAGCAACATGTCAGGTTGCATACTGGAGAGAAGCCATATAAATGCGATACGTGTGGAAAGGCTTTCAGACTCCTTCAAACGATGGTAGGCCACAAGAAAATCCACACTGGCGAGAAGCCGTTCGAGTGCGACGTGTGTCACACCCGGTTCCGCCAGAGGGCGCACCTGAAGACGCATTTGCTGACCCATACAGGGGAGAAGCCGTACGAGTGCGGGGTGTGTGGTAACCGGTTCGTCAGCGCCGGCAATCTGCGGGCGCACGCTCGAATCCACACCGGGGAGACCCCGTACGTGTGCCCCATCTGCCAAAAGGGCTTCCACGAGAAGAGCGGCTACAACAAGCACGTGAAGAAGCACAAGGCGCACGGGGATGTCATGCACCAGCCCGCCAATGCTGGTGGTCTATCGACTCACTATCGTCACTCGCCGCCCGTTCATATTATTCTGGAACATGATCAAATCAAGATGGATCCGATACAGTATAATTAG
- Protein Sequence
- FSTKQILFQLDFETLPQNVCSLCTNTLETILEFINRSKSSDVCLREIYENSKFEVEEDEADDFLDDNALDPDWESEDEKDKKTIVKEEEVTDEIKEEDVSDTSVKSERRPRKRRRKIVKQKSDSPVKVSCRPVQCNVCNVTFNRRKEYNKHKMENPECNQTKEYECDTCGMKFPYRKRDLRANTECYVCRCGKKFYNQQCYELHTQQPCEETKHRKPNPNAIKEHLCSICGKTFRAKSLLEQHFRLHTGEKPFKCEYCEKSFRLMQKMEEHIRVHTGEKPYQCERCHMSFRQRAHLKTHSLTHTGEKPYACGMCGNRFVSAGNMRTHMRIHTGETPYVCHVCGKSFHEKKFTAAYTKNDHMNKHTGARPYVCKICGESFQTFSHFSHHRRTHVEQYVVKKKMVSNQRNMNFLCPICGRSFLSKYYFDKHSVMPCEKKIKEKGSVRQSKDYLCSTCGKTFIAPSYLEQHVRLHTGEKPYKCDTCGKAFRLLQTMVGHKKIHTGEKPFECDVCHTRFRQRAHLKTHLLTHTGEKPYECGVCGNRFVSAGNLRAHARIHTGETPYVCPICQKGFHEKSGYNKHVKKHKAHGDVMHQPANAGGLSTHYRHSPPVHIILEHDQIKMDPIQYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -