Cmac015006.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- csnk1da
- Assembly
- GCA_900659725.1
- Location
- CAACVG010010519.1:234916-313997[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.0032 0.23 12.1 3.6 3 23 12 33 11 33 0.95 2 27 0.061 4.3 8.1 3.7 1 23 45 67 45 67 0.98 3 27 4e-05 0.0028 18.1 1.5 2 23 74 96 73 96 0.95 4 27 0.0081 0.57 10.9 3.0 1 23 167 189 167 189 0.98 5 27 0.00021 0.015 15.8 3.7 2 23 195 217 194 217 0.96 6 27 0.12 8.5 7.2 5.2 1 21 249 269 249 270 0.95 7 27 3 2.1e+02 2.8 0.9 2 14 291 303 290 313 0.82 8 27 0.85 60 4.5 8.6 1 23 325 347 325 347 0.93 9 27 0.0045 0.31 11.7 3.3 1 23 353 376 353 376 0.93 10 27 0.0048 0.34 11.6 3.9 1 23 388 410 388 410 0.98 11 27 0.044 3.1 8.5 2.9 2 23 417 439 416 439 0.93 12 27 0.004 0.28 11.8 5.8 1 23 451 473 451 473 0.97 13 27 0.00013 0.0089 16.5 3.4 2 23 480 502 480 502 0.95 14 27 0.00046 0.033 14.8 6.1 1 23 514 536 514 536 0.96 15 27 0.0039 0.28 11.8 0.3 2 23 550 572 549 572 0.95 16 27 0.0057 0.4 11.3 3.2 1 23 585 607 585 607 0.99 17 27 5.5e-05 0.0038 17.7 4.3 2 23 613 635 612 635 0.95 18 27 0.0085 0.6 10.8 0.1 1 21 655 675 655 676 0.91 19 27 6e-06 0.00042 20.7 1.9 1 23 697 720 697 720 0.97 20 27 0.019 1.3 9.7 3.4 1 23 732 754 732 754 0.97 21 27 0.0011 0.081 13.5 1.6 3 23 764 785 763 785 0.94 22 27 0.11 8 7.2 7.3 1 23 797 819 797 819 0.98 23 27 0.0044 0.31 11.7 2.1 2 23 823 845 822 845 0.91 24 27 0.019 1.3 9.7 3.2 2 21 856 875 855 879 0.89 25 27 0.00042 0.03 14.9 0.6 3 23 889 910 888 910 0.96 26 27 0.00056 0.04 14.5 0.4 1 23 922 944 922 944 0.98 27 27 0.043 3 8.6 0.7 2 17 955 970 954 971 0.92
Sequence Information
- Coding Sequence
- ATGTCAGATCATTTGGGTTATTCAGTCAAAGCATGCCAACATTGTGATGCGAAATTTAAACATAAAACTTCTCTGGAGGATCACATTGTCAAGAAACATCCAGAGTTTATTAAATCTGTTAATAAGGAAATATATGAATGTTCAAATTGTACGTTTAAAACGACCAAGAAGTCTGTTCTCAAACAACATACGTCGAAGCATTTTAAAAACATCCTCAAAACGTGTAAACATTGTGGTATTAGTTTCAGAAGAGAAAAGTCACTCGAAGATCACATCTTACAAATTCATCCAGACTTTGCCATCACAGTTAACTGTTTATATTGCACAGACAAGACCTCATCCAATCATAAGGTTATTGACCACACGATGACAAATTCCAGTGAGCagtgtaatagtaaaagtggcgATTTTGATGtcgaattcaaaaataaacagTTTCTAGATGAACACATTATAAAGAAACATCCAGATTTCATCGCATCTGTCACTACGAAAATATACGAGTGTTCATATTGTGCGTACAAAACCACTTTCGTGACGCATTTGAATAAACATATGTCAATTCATTTTGTTGGTGATATGACATGTAACCATTGTGATAACACATTTAAAACCAAGCGATCTCTAAATGATcacattataaaaaaacatcCTGATGCTGCTACTACTACAGCTACGGAAAAAGGAGGCGTTGAGAAAAAACAGGGACAAGTTGGCAGAAAATCGGCCGAAGTATTCATTTGCTTCAGTTGCTATAAATGTAGCTACACATTTCGGTGTAAACGTGATCTGACTAAACATATCAAGAGCAACTGTAGCATAAAACAGGATGGGAAAGCCAAAAATACACCCAACGGACCGCCAGCACTTACTTGCCTGCACTGTAATTCGACATTTAAGACGAAAAGAATCAGAGATGATCATATAATAAAGCAACACCCCGATTCTGCGGCTTCAGTTAGAAGAAAAATATACGAGTGTTCaagttgcacttataaaaccACCCATAAGCATCATTTCAATCAGCACATGTGGACCCATTCTAGTGGCGAACTCTTTACATGTCAACACTGTACTGCGACGTTCAAAAGCAAATACTCTCTAGACGACCACGTTGTCAAGAAACATCCGGCGTGTCTAGACTCTATCAATAAGAGAATCTATCAATGTTTGCATTGCAAGTTCAAAACAATCAATAAGAACAATTTCAATGTGCATATGTCTATCCATGTGGGCAGTCGACTCAAGAAATGTCAACATTGTGCTGCAACGTTCAAAAGCAAATTCACTCTGGAAGATCACGTTGTCAAGAAACATCCAGAGTTTATTTCATCTGTTGACAGCGAGATCCATAGATGTTCATATTGTTCATACACAACTGTCAATAAGTACAGTTTCAAAAAACATTTGTCGATGCATGCTGATGACAAGCAGAACACATGTAAacactgtgataccagtttcaaACAGAAACAATCACTGGAAGATCACATTTTACAGAAACATCCAGAGTTTACTGTATCAGTCACCAAGAAAATACATGCATGTTCACATTGCACATACAAAACCACGTCTAATTATAATCTGAAAAATCACATGTTGACTCATTCCAGTGAAGATAGTAATAGTAAAAATGTGGATTTCCTCAAATGTGATTACTGTGATGCCGGATTCAGGAGTAAACTGTATTTGGATGACCACATCATAAAAAAACATCTAGACTCCGTCGCGTCTGTTACTAcgaaaataatatacaaatGTTTATATTGTGCGTACAAAACCACGATCAAGttgtatttgaaaaaacatatgcGTACTCATTCTGCTGTTGAGATGACATGTAATCATTGTGATACCACATTTAAAACCAAGCGATCTCTAACTGATCACATGGTAAAGAAACATCCTGATTTTAGTACAGCCGGAAACCGTGGAACAGACCCTCAAGCAGATAGGCAGCTATTCCTCTGTTATAATTGTGGTTACACAGCCTCCTCTAAAGTGCAACTGATCCGCCACATCAGTATTGGCAAATGTACTACAAAAAGAAATTTGGATGCATCTCAGTCAGCTAGGTCAATGGATGTGTACGTTTGTACAGAGTGTAACAAAGTGTTTAAAAAGAAATACACACTAAACGATCACCTTATCAAAAAACATGCCGAATCTGTGACAACGGCTTCGTCTAAAATGCATCAATGTACACAGTGTAACTACAGAGCTACAAATAAGAAACAAATTATCAAGCATATGTTCATACATCCCAGTGCAGCTTACGAGTCCAATATATGTAAGCATTGTTACAAGTCGTTCAAAAGTCCACAGGGTCTTGACAACCATATAATTCAGAAACATCCCAAATTTATAGCGTCAGTTAGAAGGAAGATTCATACATGCACGGATTGTACATACAAAACTATTTATAAGTATCATTTTAGGGAGCATACGCTGACCCATTCTAGCACAGAATGTAAGCATTGCAATGTCACATTCAAGAGCAAAAGATTATTAGACGATCATATAGTAAACAAGCATCCAGATGCAGCTTCTTGTTATAATCTGATCACTTGTGAGCACTGTGATACTACGTATAAGACTAAAAAGCTCTTAGATGATCacCGACATCAACTGAGCCATTGTAGTGATGTCAGCAATGTCAACATATGCAACTATTGTGGCGCCCAATTCAAACGCAAACGATCCCTAGATGACCATATTATAAAGAAGCATCCAGATTTTAGTGCGTCAGTTTCTTGCAAGATTTACGAATGTCCAAATTGTGagtataaaacagctcaaaagaaTGATTTAGACAGGCATCTATTGAAGCATCCAGAGGCGGCTTCTCTTCATAACCTCATTTCTTGCAAGCACTGTAATACGTCATATAAGAGTCAGCAAAGCCTACAACAGTCCAGGCGAGACGATCTGGAATCTTTAGGTTATGTATTAATGTACTTTAACAGAGGCAGTCTGCCCTGGCAAGGGCTCAAGGCTGCTACCAAGCGGCAAAAGTACGAACGAAtctcggaaaaaaagatgtctaCACCGATTGAGGAACTGTGTAAGGGCTATCCCGTAGAATTTCCAACGTATCTGAACTACTGTAGacaattaaaatttgaagagAGACCTGACTATAGTTACTTGAGGCAACTATTCAGAACACTGTTCCATAGGCAGGGTTTTACTTATGACTATGTTTTCGACTGGAATATGCTCAAATTTGGTGGTTCGCGCGGCGGACATTGCGAGGACAACAacgccggcggcggcggcggcgccaACGCGGCGGCCGCCGGCGGCAGGGGCACCGCCGCCGGGGGCGGCCGTTACCACGCCATAACGGGAGCCGGGGGCGGCGAGCAGCAGGGGCAGCCGAGAGGCAGGCGACCGCCCCCGCCGCAACAGCAGCAGCACGACGGCCGGCTGGTAGATGGGGGCGGCGGGGGCGGGGGTGGCGGCCAGCAGCAGTTGGGCGGCGGCGGCCAGGTGCAGGgaggcggcggcggcgcggccgGAGTCGTCGCCAACGACGAGATGTACGATAGTCACGAAAGGCGAGTCTCAATGCGCTTGAGAGCTGGCCAGGGTGCGCCCAACGCCTCTACCTCCGACCTCAGTACCTCTAAGCAAGCCAACGCCTCCGTAGCGGCGATGGCGCCTCCCGCACCTAGGAGGGGCAGCGCCTCCAAGGACACGCCCCCTCCCCCAGCGCAGGCGCAGCCGAACGCTGCCACGGTCGGCCGGATGAAAAAGTAG
- Protein Sequence
- MSDHLGYSVKACQHCDAKFKHKTSLEDHIVKKHPEFIKSVNKEIYECSNCTFKTTKKSVLKQHTSKHFKNILKTCKHCGISFRREKSLEDHILQIHPDFAITVNCLYCTDKTSSNHKVIDHTMTNSSEQCNSKSGDFDVEFKNKQFLDEHIIKKHPDFIASVTTKIYECSYCAYKTTFVTHLNKHMSIHFVGDMTCNHCDNTFKTKRSLNDHIIKKHPDAATTTATEKGGVEKKQGQVGRKSAEVFICFSCYKCSYTFRCKRDLTKHIKSNCSIKQDGKAKNTPNGPPALTCLHCNSTFKTKRIRDDHIIKQHPDSAASVRRKIYECSSCTYKTTHKHHFNQHMWTHSSGELFTCQHCTATFKSKYSLDDHVVKKHPACLDSINKRIYQCLHCKFKTINKNNFNVHMSIHVGSRLKKCQHCAATFKSKFTLEDHVVKKHPEFISSVDSEIHRCSYCSYTTVNKYSFKKHLSMHADDKQNTCKHCDTSFKQKQSLEDHILQKHPEFTVSVTKKIHACSHCTYKTTSNYNLKNHMLTHSSEDSNSKNVDFLKCDYCDAGFRSKLYLDDHIIKKHLDSVASVTTKIIYKCLYCAYKTTIKLYLKKHMRTHSAVEMTCNHCDTTFKTKRSLTDHMVKKHPDFSTAGNRGTDPQADRQLFLCYNCGYTASSKVQLIRHISIGKCTTKRNLDASQSARSMDVYVCTECNKVFKKKYTLNDHLIKKHAESVTTASSKMHQCTQCNYRATNKKQIIKHMFIHPSAAYESNICKHCYKSFKSPQGLDNHIIQKHPKFIASVRRKIHTCTDCTYKTIYKYHFREHTLTHSSTECKHCNVTFKSKRLLDDHIVNKHPDAASCYNLITCEHCDTTYKTKKLLDDHRHQLSHCSDVSNVNICNYCGAQFKRKRSLDDHIIKKHPDFSASVSCKIYECPNCEYKTAQKNDLDRHLLKHPEAASLHNLISCKHCNTSYKSQQSLQQSRRDDLESLGYVLMYFNRGSLPWQGLKAATKRQKYERISEKKMSTPIEELCKGYPVEFPTYLNYCRQLKFEERPDYSYLRQLFRTLFHRQGFTYDYVFDWNMLKFGGSRGGHCEDNNAGGGGGANAAAAGGRGTAAGGGRYHAITGAGGGEQQGQPRGRRPPPPQQQQHDGRLVDGGGGGGGGGQQQLGGGGQVQGGGGGAAGVVANDEMYDSHERRVSMRLRAGQGAPNASTSDLSTSKQANASVAAMAPPAPRRGSASKDTPPPPAQAQPNAATVGRMKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -