Cmac003212.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010004230.1:100917-145505[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.7 6.2e+02 1.3 1.3 16 23 3 10 1 11 0.86 2 13 0.0035 0.25 12.0 3.4 1 19 44 62 44 67 0.92 3 13 0.00021 0.015 15.9 0.2 1 23 73 95 73 95 0.97 4 13 0.00027 0.019 15.5 1.4 1 21 100 120 100 121 0.96 5 13 9.4e-07 6.7e-05 23.2 0.4 1 23 131 153 131 153 0.98 6 13 0.00067 0.047 14.3 2.8 1 23 163 185 163 185 0.99 7 13 3.1e-06 0.00022 21.6 0.1 1 23 191 213 191 213 0.97 8 13 4.9e-06 0.00034 21.0 0.9 1 23 219 241 219 241 0.99 9 13 3.1e-06 0.00022 21.6 3.5 1 23 247 269 247 269 0.96 10 13 1e-05 0.00073 20.0 2.5 1 23 275 298 275 298 0.97 11 13 0.0001 0.0071 16.8 1.2 2 20 305 323 304 326 0.95 12 13 3.3e-06 0.00024 21.5 0.3 1 23 332 354 332 354 0.98 13 13 1.4e-05 0.00099 19.5 3.2 2 23 361 383 360 383 0.94
Sequence Information
- Coding Sequence
- CAGGGTTTGAAGAGACATATATCAACTCACCATGAGGATGACCAGGACAAAGAAGATGATGATCCCCTTTCACTACAGCTGTGTTCTTGTTGTGGCGAACCTTCAGATACGGCTCATTCTTTTGGCGACTACAAGTGCAGTATATGTGATAAACTGTTCGTCCAGTTGGTCTGTCTTAACCGCCATTGTAGCATCGAGCACCCTACAAATGGAAAATACCAGTGTGTCGAGTGCAAAAAGGTGTTGGATGATAAAGAAGCGTTAAGCCAACATATGTACCTTCATCCTATCAAGATTTTCAAATGTCCAGCCTGCAGGAGAGAGTTCAGCAGGAGGTTTGATCTAGCAAGACACATTTGTCAGTCATCTTGTATGGGGCCCAGAAAAACCTTCGAATGTAGGGTTTGTAGCAGGGTGTTTACTCGAAAGGACAATTTGGCCGAACATCTGAGAGGTCATGCCGGTCAggcaaaaccaaaaaagatgtTCAAGTGTACATTCTGTGCTAAGGAGTTTTGCGGTAACAATTTGCTGCAAATCCACGAAAGGACTCATACAGGCGAAAGACCGTTTGCGTGCGACCTGTGCCCGAAGAAGTTCCCGTCTAGCGGTGCGCTGGCGAAGCACCGACGGATGCACACCGGCGAGAAGCCGTACGAGTGCGAACAGTGCCAGAAGCGGTTCGCCGCCAAGGAGACGCTCAACCGGCACGTGAAGACCCACACCGGCGAACGGCCCCACACCTGCCAGTTCTGCGGCAAGTCCTTCATCCAGCCCAGCCAGCTGAGGGCGCATATCTTCCACCACACCGGCGAGAACGGCTACTCGTGTCCTCATTGCGGCCGAGCCTTCAACAGAAAGTTGAGGCTGACCACCCACATCAAatacaTGCACGAAGGAGCTGATCCAATTCCATGCAAGGTTTGTGgaaaaacttttttccgaaacgAGGATATTCAAAGACATATGGTTTGTCACAGTAATGAAAAACCGTATGCGTGTGACATTTGCAATAAAGCATTTGCCGTGAAATCCTCGTTGAAGCTGCACAAACTGACGCATCAGAAGGAGCCTCCTTGCAGTTGCGATACATGCGGCAGAGCTTTCATAAGAAAAGACTGTCTGATTAGGCATATCAGAGCGCGGCACAGAGATGTCCTGGAAGATATTATGGCTAGCGCAGAGAAGAAAAGGTTACAGCAACAGCTACTTAAGGCAGCTACTGATGCTGCAGCTTGCCAGAAACTATCAGAAAATCTCATTTGGAATGAACTAACACTAACTGAGTCTGTAAAGGAGTTATTGACACTCCTCGTGGAAGAGGATTCTTTAGCTGAATTTGGATATCCAGATGCTCCCGTTGATAAAGTATTGGACTGTGTTATAAAGCGATGTGGACACAAACCTGCTTCTGATGAAGACTTTGACTACATTGGAAGGATGAGAGAAAACGCCAAGTTGCTATTCACAGTTGTTATTGATGATTCTGCTGTGAAAGAACTTCTGAATAATCAGACTGTCGATGAAGTTATCCTCCAAGTACTGCGATTAGCGAAGAAACAAAATACTTGA
- Protein Sequence
- QGLKRHISTHHEDDQDKEDDDPLSLQLCSCCGEPSDTAHSFGDYKCSICDKLFVQLVCLNRHCSIEHPTNGKYQCVECKKVLDDKEALSQHMYLHPIKIFKCPACRREFSRRFDLARHICQSSCMGPRKTFECRVCSRVFTRKDNLAEHLRGHAGQAKPKKMFKCTFCAKEFCGNNLLQIHERTHTGERPFACDLCPKKFPSSGALAKHRRMHTGEKPYECEQCQKRFAAKETLNRHVKTHTGERPHTCQFCGKSFIQPSQLRAHIFHHTGENGYSCPHCGRAFNRKLRLTTHIKYMHEGADPIPCKVCGKTFFRNEDIQRHMVCHSNEKPYACDICNKAFAVKSSLKLHKLTHQKEPPCSCDTCGRAFIRKDCLIRHIRARHRDVLEDIMASAEKKRLQQQLLKAATDAAACQKLSENLIWNELTLTESVKELLTLLVEEDSLAEFGYPDAPVDKVLDCVIKRCGHKPASDEDFDYIGRMRENAKLLFTVVIDDSAVKELLNNQTVDEVILQVLRLAKKQNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -