Cmac002852.1
Basic Information
- Insect
- Callosobruchus maculatus
- Gene Symbol
- -
- Assembly
- GCA_900659725.1
- Location
- CAACVG010003655.1:21549-53511[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00014 0.0097 16.4 1.1 1 23 235 257 235 257 0.98 2 28 0.39 27 5.6 0.2 5 23 305 324 295 324 0.82 3 28 0.011 0.76 10.5 1.8 1 23 336 358 336 358 0.98 4 28 0.3 21 5.9 0.8 5 23 371 390 368 390 0.90 5 28 0.0004 0.028 15.0 2.2 1 23 402 424 402 424 0.98 6 28 0.00011 0.0076 16.8 3.4 1 23 430 453 430 453 0.96 7 28 0.027 1.9 9.2 1.2 1 23 465 487 465 487 0.98 8 28 0.027 1.9 9.2 1.5 3 23 496 517 494 517 0.92 9 28 0.00026 0.019 15.5 1.4 2 23 530 551 529 551 0.96 10 28 0.00025 0.018 15.6 4.1 1 23 557 580 557 580 0.96 11 28 1.7 1.2e+02 3.6 0.4 1 23 592 615 592 615 0.95 12 28 0.0098 0.69 10.6 1.1 2 20 626 644 625 648 0.87 13 28 0.22 15 6.3 6.8 1 23 660 682 660 683 0.95 14 28 0.027 1.9 9.2 0.9 2 23 693 715 692 715 0.92 15 28 0.0099 0.7 10.6 1.2 2 23 728 749 727 749 0.96 16 28 1.6e-05 0.0011 19.4 2.7 1 23 755 778 755 778 0.97 17 28 0.036 2.5 8.8 1.3 1 23 790 812 790 812 0.98 18 28 6.2e-05 0.0044 17.5 1.8 2 23 838 859 837 859 0.97 19 28 2.4e-05 0.0017 18.8 2.6 1 23 865 888 865 888 0.97 20 28 0.044 3.1 8.6 3.0 1 23 900 922 900 922 0.98 21 28 0.00023 0.016 15.7 2.8 2 23 930 952 929 952 0.93 22 28 0.0045 0.32 11.7 1.1 1 23 964 987 964 987 0.97 23 28 1.8 1.3e+02 3.5 0.9 1 23 999 1021 999 1021 0.96 24 28 0.14 10 6.9 0.8 2 20 1029 1047 1028 1051 0.83 25 28 0.3 21 5.9 0.9 1 23 1063 1085 1063 1085 0.84 26 28 0.00011 0.0081 16.7 0.5 2 23 1091 1113 1091 1113 0.95 27 28 0.0026 0.18 12.4 2.1 1 23 1125 1147 1125 1147 0.98 28 28 0.024 1.7 9.3 3.9 1 23 1157 1180 1157 1180 0.93
Sequence Information
- Coding Sequence
- ATGGATCCAGAGATGGAAACTCTCCCGTCTAGAGAATTGGATCTAGTCGGGAAAAAAGATACTGATGAAAATGCTGATGTAGCTTCAAGCAGaataaaaattgagCACATTGAAGATAAATGGAATAACTGCAATTCGGATAACAAACAAGATATTCAACTGGAGATTGAAAATAAATGTCCAATGAGTACAAACATTGAGGAAGTCCAAGCAGCAGGAGCCATTGAACATGAACACCATTTTGTCAAGAGTGAAAATGATGAGAGCATTGAAGACACTACAGTTTTAAACAGGATAAAAAGTGAGGACAACGACTGGGATGAGTTTGATGCATCGAAGGTTGGAGATGATGAGAGGCTAGCAATGAAAATAGATAGTGAAGTTAAAGAAGAGCTCATCGTCAAAGGTGAAGCTGATGAAAATCCATACACAATAACTGAAGCAGATCTGAAGAgAATAAAGAAGGAAAGCAGTGAGAATTATTTGGATGAACACGCCACACATGACACCGCCATAAAGCCGGAAACAGACATGGATAGTGAAGACTTCAAAGTTACAGAAATCACAGAGGAATTCAACATCAAAACTGATAGTGACGCAAGCATGGATGCTGTTGAAGATATGGCTTCAAATAGTATGcaaaaaagtataataccaAGGAACCATCATGAAGTCCAATCCAAAAAGGCGGATAGAGAATCGTTTAGTTGCTATGATTGTAGTAAGACTGTTTACAGTAAATATGATCTAATCAACCACCTGAAAGTGCATGATAACCAAACAGATGTATCAACCCAAGATGCTCATCTAAATAAAATAGATGGTGATACACCTACGTTATGGCATCTTAAAAAGGCTAAGACTGCTTCAAGTAATAAGGTCTACACTTGCGTTTACCGTGATGATGATAATCAGTGTAATGCAATATTCAACAGAAAATCAGCACTGGACGACCATGTagtgaaaaaacatccaaatgtcATTAAGTCAGTCACAAATAAAATATACGAATGTGCAGAATGCGTTTATAAAACTACGTATAAGTATAATTTTTACAGACATTTGACAGTACATCAAAAAACCGCGTCATATAAGCGCATTATCTGCATTCACTGTAATGCTTCATTCAACAATAAGATATCGCTAGATGATCATATAGTTAGGAAACATCCAGATTTAACTGCATCagtctgtaaaaaaatatttgaatgctTACAATGCAGTTTTAGAACCGTTCGTAAAAGTTATTTACGTAATCATATGCTAACCCATTCTAACTATAAGCTGTACACGTGTACACACTGTGATGCGAAATTCAAGAGAAAAGCAACATTAAATGATCATACAATTAGAAAACACCCCGATTTTGCTACATCAGTTGACAGCGTAGTATATGAGTGCACTAGTTGCCCCTATAAAACTACGGCCAGTATTCACATCAAAAGACATATGTTGATACATTCTGAAACTTGTAAGCTGTCCATCTGCAAACACTGTAATGCGACATTCAAAAGTGAAACAACACTGGATGATCATGTCGTGAGAAAACATCCAGATTCAGCTGCATCTGTCGGCAAGAAAATATTAGAATGCTTACAATGCAGTTTTAGAACCGTCCGAAAAAGTAATTTACGTCAACATATGCTAACGCATTCTAACTATAAGCTCCACATGTGTACACACTGTGATGCGAAATTCAAGAGAAAAGCAACATTAAATGATCATATAATTAGAAAACATCCCGATTCCGCCACGTCAGTTGACCGTGCAGTATATGAGTGCACTAGTTGCGCTTATAAATCCACAGTATTGAGTCAGATCAACAGACATAATATGTCGGTACATTCTGCAACTCCTCAGACTTGTGAGGTGTCCACGTGCAAACACTGTGATGCGACATTCAAAACCAAAAGAGCACTGGATGGTCATGTAGTGGAAAAACATCCAGAGTTCATTCCATCAGTTTCTAGGAAGATGCATGAGTGTAAAATATGCTTTTACAAAACTATCCATGCATACAAATTGAATATGCACATATCAAAGCATCATGAGACTGCTTCGAGTTATAAACTCATTCGGTGCGTTCACTGTGAAGCGAcattcaaaaccaaaacagcacTGGATTTACATGTAGTTAAGAAACATCCAGATTTAGCTGCATCAGTCGGCAAGAAAATATTAGAATGCTTACAATGCAGTTTTAGAACCGTTCGAAAAAATTATTTACGTCAACATATACTAACGCATTCTAACTATAAGCTCTACACGTGTACACACTGTGACGCGAAATTCAAGAGAAAAGCATCATTAAATGAtcatataattaaaaaacaccCCGATTTTGCTACATCAGTTGACAGCGTAGTATATGAGTGCACTAGTTGCCCCTATAAAACTACGGCCAGTATTCACATCAAAAGACATATGTCGGTACATTCTGAAAGAGCACTGTATGAATATGTagttagaaaacatccagattCAGCTGCATCAGTCGGTAAGAAAATATTAGAATGCTCTCAATGTAGTTTTAGAACCGTTCAAAAAAGTAATTTACGTAAACATATGCTAACGCATTCTAACTATAAGCTCTACACGTGTAAACACTGTGATGCGAAATTCAAAAGAAACGCAACATTAAATGATCATATAATTAGAAAACATCCCGATTTTGCTACATCAGTCAGCAGCGCTGTATATCAGTGCACTAGTTGCACCTATAAAACTACGGTCAGTATTCACATCAAAAGACATATGTCGGTACATTCTAAAACTTGTAAGCCGTCCACGTGCAAACACTGTAATGCGAcattcaaaaccaaaacagcacTGAATAAACATGTAGTCAAGGAACATCCAGATTTAGCTGCATCAGTCGGTAAGAATCTATTTGAATGCTCACAATGTAGTTTTAGAACCGTTCAAAAAAGAtctttaaatagtcatataattAGAGACCATCCCGATTTTACTTCATCAGTTGATAGCACAATATATGAGTGCACTAGTTGCATCTATAAAACTACGGCCAGGGGTTACTTCGAAAAACATATGTTATTACATCCTGAAACTTGTAAGGTGTCCACGTGCAAACACTGTAATGTGACATTCAAAACCGAAAGAGCAGTGGATGAACATGTAGTTTGGAAACATCCAGATTTAGCTGCATTAGTCGGtgagaaaatatttgaatgctCAGAATGTGGTTTTAGAACCTTTCGAAAAAGTTATTCAGATGAACATATGCTGGCGCATTCTAACAAGCTCAACACGTGTACATACTGTGATGCCGCGTTCAAGAGAAAAACAACATTAAATGACCATATAGTTAGAGAACATCCCGATTTTGCTGCATCAGTTGACAGTGCAGTATATGAGTGCACTAGTTGCACTTATAAATCCACAGTTAGGAGTCAGTTCAACAGACATATGTCGGTACATTCTGAAACTCCTCGTCCTCGTAAGCTGCACACGTGCAAACACTGTAATGCGACATACAAAACCAAAAGAGCACTGGACGATCATGTAGTGAGAAAACATCCTGACTTCATGAGCAGTTATCATCAGTTTCTAGAAAGATACACGAATACAGAATCTGCCGTTACACAGCCATCCATTTAA
- Protein Sequence
- MDPEMETLPSRELDLVGKKDTDENADVASSRIKIEHIEDKWNNCNSDNKQDIQLEIENKCPMSTNIEEVQAAGAIEHEHHFVKSENDESIEDTTVLNRIKSEDNDWDEFDASKVGDDERLAMKIDSEVKEELIVKGEADENPYTITEADLKRIKKESSENYLDEHATHDTAIKPETDMDSEDFKVTEITEEFNIKTDSDASMDAVEDMASNSMQKSIIPRNHHEVQSKKADRESFSCYDCSKTVYSKYDLINHLKVHDNQTDVSTQDAHLNKIDGDTPTLWHLKKAKTASSNKVYTCVYRDDDNQCNAIFNRKSALDDHVVKKHPNVIKSVTNKIYECAECVYKTTYKYNFYRHLTVHQKTASYKRIICIHCNASFNNKISLDDHIVRKHPDLTASVCKKIFECLQCSFRTVRKSYLRNHMLTHSNYKLYTCTHCDAKFKRKATLNDHTIRKHPDFATSVDSVVYECTSCPYKTTASIHIKRHMLIHSETCKLSICKHCNATFKSETTLDDHVVRKHPDSAASVGKKILECLQCSFRTVRKSNLRQHMLTHSNYKLHMCTHCDAKFKRKATLNDHIIRKHPDSATSVDRAVYECTSCAYKSTVLSQINRHNMSVHSATPQTCEVSTCKHCDATFKTKRALDGHVVEKHPEFIPSVSRKMHECKICFYKTIHAYKLNMHISKHHETASSYKLIRCVHCEATFKTKTALDLHVVKKHPDLAASVGKKILECLQCSFRTVRKNYLRQHILTHSNYKLYTCTHCDAKFKRKASLNDHIIKKHPDFATSVDSVVYECTSCPYKTTASIHIKRHMSVHSERALYEYVVRKHPDSAASVGKKILECSQCSFRTVQKSNLRKHMLTHSNYKLYTCKHCDAKFKRNATLNDHIIRKHPDFATSVSSAVYQCTSCTYKTTVSIHIKRHMSVHSKTCKPSTCKHCNATFKTKTALNKHVVKEHPDLAASVGKNLFECSQCSFRTVQKRSLNSHIIRDHPDFTSSVDSTIYECTSCIYKTTARGYFEKHMLLHPETCKVSTCKHCNVTFKTERAVDEHVVWKHPDLAALVGEKIFECSECGFRTFRKSYSDEHMLAHSNKLNTCTYCDAAFKRKTTLNDHIVREHPDFAASVDSAVYECTSCTYKSTVRSQFNRHMSVHSETPRPRKLHTCKHCNATYKTKRALDDHVVRKHPDFMSSYHQFLERYTNTESAVTQPSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -