Basic Information

Insect: Callosobruchus maculatus
Gene Symbol: -
Assembly: GCA_900659725.1
Location: CAACVG010005267.1:223782-231151[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.2e-06 0.00023 21.6 3.9 1 23 10 32 10 32 0.97

2 15 9.3e-07 6.5e-05 23.3 2.5 1 23 38 60 38 60 0.98

3 15 2.9e-06 0.00021 21.7 2.9 1 23 172 194 172 194 0.99

4 15 1.7e-05 0.0012 19.3 3.1 1 21 201 221 201 222 0.95

5 15 2.1e-05 0.0015 19.0 2.5 1 23 230 252 230 252 0.98

6 15 6.9e-06 0.00049 20.5 6.1 1 23 274 296 274 296 0.97

7 15 2.6e-06 0.00018 21.9 2.4 1 23 302 324 302 324 0.98

8 15 2.4e-06 0.00017 22.0 2.4 1 23 330 352 330 352 0.99

9 15 7.2e-07 5.1e-05 23.6 0.7 1 23 358 380 358 380 0.98

10 15 5.7e-08 4e-06 27.1 0.5 1 23 386 408 386 408 0.99

11 15 1.5e-05 0.0011 19.4 0.2 1 23 414 436 414 436 0.98

12 15 3.4e-08 2.4e-06 27.8 1.8 1 23 442 464 442 464 0.99

13 15 9.4e-07 6.6e-05 23.2 0.6 1 23 471 493 471 493 0.98

14 15 4.6e-05 0.0033 17.9 0.9 1 23 499 521 499 521 0.94

15 15 0.00015 0.01 16.4 3.8 1 23 527 550 527 550 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.2e-06	0.00023	21.6	3.9	1	23	10	32	10	32	0.97
2	15	9.3e-07	6.5e-05	23.3	2.5	1	23	38	60	38	60	0.98
3	15	2.9e-06	0.00021	21.7	2.9	1	23	172	194	172	194	0.99
4	15	1.7e-05	0.0012	19.3	3.1	1	21	201	221	201	222	0.95
5	15	2.1e-05	0.0015	19.0	2.5	1	23	230	252	230	252	0.98
6	15	6.9e-06	0.00049	20.5	6.1	1	23	274	296	274	296	0.97
7	15	2.6e-06	0.00018	21.9	2.4	1	23	302	324	302	324	0.98
8	15	2.4e-06	0.00017	22.0	2.4	1	23	330	352	330	352	0.99
9	15	7.2e-07	5.1e-05	23.6	0.7	1	23	358	380	358	380	0.98
10	15	5.7e-08	4e-06	27.1	0.5	1	23	386	408	386	408	0.99
11	15	1.5e-05	0.0011	19.4	0.2	1	23	414	436	414	436	0.98
12	15	3.4e-08	2.4e-06	27.8	1.8	1	23	442	464	442	464	0.99
13	15	9.4e-07	6.6e-05	23.2	0.6	1	23	471	493	471	493	0.98
14	15	4.6e-05	0.0033	17.9	0.9	1	23	499	521	499	521	0.94
15	15	0.00015	0.01	16.4	3.8	1	23	527	550	527	550	0.96

Sequence Information

Coding Sequence: ATGGAAACCCACAGCGAAGTGAAGCCCCACGTGTGTGAGGTGTGCGGAAAGTCGTTCAGAAAAAACTGCCAGTTGACCACGCATGTGCGCGTTCACACCAACGAAAGACCGTACAAATGCAGCATGTGCGATAAGACCTTCAAGCAAAACGGATCTCTGCGCACTCACTATTACGTACATGGTGTCATGCCGGAGAAGTATAAGTCGCCAGATCAGCTGATTTTCGAGCACATTCACGAGAACTGTTTCTGCTCAGAACTGTACGATGCTACGATAGATATCAACCTCCAACAGATCAAGCACTCTTTGGACGACATGTACTACTCACACTGTTGGGATTTGGCAAACAACTCTGTTGAGCCTCCCAACACGAAACCCATGGCTCCTATTCAAGACCATGATGATGAAGATGACATTCTCAAAACGCTGCTTTCAGAACACGAACACCTGTTGAGCCCGGATTTCGATATACCTATAAATGATCCTGTATTAGATGAAGATCTGGTAAAAGAgttcaaatgtgacaaatgcgaAAAAGTCTTGAAAACAGAGAGCAATTACAGAAGACACTTACGTAAACATGGAATTACCGTAGAAGATTATAAATGCGACTCGTGCAGTAAGACATTCCGAAGGAAGTTCTACCTCAAGAAACATATACTGAGACAGTGCCAAATAAAGAAAACGTACACGTGCCAAAAATGTAACAGggtttttacaaaaatatttaactaTGAGAAACATATGAGCATCCACGCTAGGTGTGAACTTCAAGACCGAGAAGAGAAACAGAAACTGTTGGAATCTGTTAAAAGGCCTCACAAGTGTGATCAGTGTGATAAACGGTTCACGACCAATTTCAATCTAAAAAAGCACAAGTTGAGTCACGCCGAAGAAAAGCCGTTCAAGTGCTCTACCTGTGGGAGATCCTTTACTGAAAAGTACAAACTGACATCGCATGAACGGATCCATACCGGGGAGAGGCCATTCAAATGCACCCAGTGTGAAAAGTCGTTCAACAAAACTGAAAGCCTCACCATTCATCTGCGTACCCATACTGGAGAAAAGCCATACGCTTGCAGTCAATGCGGCAAGCGCTTCAGTGCCAGTGGAGGCCTAGCTCATCACATGCGCACTCATAGCAACGAAAAACCGTTTCAGTGCAAAATATGCGGAAAAGCGTTCAAGAAAAACGATGCTCTAGTGGTACATACGAGAACGCATACCGGTGAAAAACCTTTTGTGTGTACAATCTGTGATAGGGGGTTTGTGGAGAAAGACAAATTGGTGCAACATATGACTATCCACACAGGAGAAAGGCCTTTCAAATGCCCAAAGTGCGATAAAGCTTTCATCAAGCAATACCTTCTCACTCAGCACATGAGAAGACATACGAACCCCAAGAAACCGTATAAGTGTAAAGAATGCGGTTGGAGTTTTGTTAGTCAAAGAAATCTTGATGATCATAAGAAGGTTCATTTACAAGAAAAACCGTACAAATGCAACGTATGTGGCAAGTGCTTTGCGAAAAGTAACGTTCTTGCTGATCATATGCCCACTCACACTGGTGAAACTCCTCATAAGTGCAATATTTGCGAAAAAACCTTCAAATTCAGAAGCGCTCTTAGTTTACATAATAAGAAGGAACACTCGATGAGttatatttga
Protein Sequence: METHSEVKPHVCEVCGKSFRKNCQLTTHVRVHTNERPYKCSMCDKTFKQNGSLRTHYYVHGVMPEKYKSPDQLIFEHIHENCFCSELYDATIDINLQQIKHSLDDMYYSHCWDLANNSVEPPNTKPMAPIQDHDDEDDILKTLLSEHEHLLSPDFDIPINDPVLDEDLVKEFKCDKCEKVLKTESNYRRHLRKHGITVEDYKCDSCSKTFRRKFYLKKHILRQCQIKKTYTCQKCNRVFTKIFNYEKHMSIHARCELQDREEKQKLLESVKRPHKCDQCDKRFTTNFNLKKHKLSHAEEKPFKCSTCGRSFTEKYKLTSHERIHTGERPFKCTQCEKSFNKTESLTIHLRTHTGEKPYACSQCGKRFSASGGLAHHMRTHSNEKPFQCKICGKAFKKNDALVVHTRTHTGEKPFVCTICDRGFVEKDKLVQHMTIHTGERPFKCPKCDKAFIKQYLLTQHMRRHTNPKKPYKCKECGWSFVSQRNLDDHKKVHLQEKPYKCNVCGKCFAKSNVLADHMPTHTGETPHKCNICEKTFKFRSALSLHNKKEHSMSYI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -