Cvom011676.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000307.1:922641-927563[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.048 2.4 9.0 2.5 2 20 553 571 553 573 0.94
2 9 1.1 55 4.7 3.0 1 23 582 605 582 605 0.92
3 9 0.058 2.9 8.8 5.8 1 23 610 632 610 632 0.98
4 9 8.9e-05 0.0044 17.6 0.2 1 23 643 665 643 665 0.96
5 9 5.4e-05 0.0027 18.3 3.4 1 23 670 692 670 692 0.98
6 9 2.4e-05 0.0012 19.4 1.5 2 23 699 720 698 720 0.96
7 9 0.0019 0.094 13.4 0.7 2 23 726 747 725 747 0.97
8 9 5.9 2.9e+02 2.5 1.0 1 12 787 798 787 810 0.75
9 9 0.00011 0.0054 17.3 1.8 2 23 817 839 816 839 0.95

Sequence Information

Coding Sequence
ATGCGTAGCTGTTGCATTTGCATGAAAAAAGTTGTACGTGGAAATGGCACTTTTTTTAATATTCCAAAAGACGAAAAAAGGAGAAAAAAATGGTGTGATATTTGCAAAGTGGATTTTACTCCAAATGCCCGCATTTGTGAGGACCACTTCCGTTCAGCAGACATGATAAAAACGGGACAAAAAAAGTTGCTTATGCCCAATGCTATGCCTCTCGTTCAGCCATTGCAACAAGTTCCCTTTCATCCGTTATTAGAAGACGATCTAAAACGTAATAGTTATGAAGATCAGAAAGGGATATTACGACAAAATTTATTTAACATAAATAACAATGCTCAACCGGCTGAAATTCAAACGAGTCCTATTTTACAAATCCCTCTTTTCAAATCGGATTCTAAAGCAGCGGCAACGCAAACTAATACTCGTTACTGCGGCACTATACAAGTTTCAGAGTTTGCCGATGAATACCGTATTAATTGTTTCTATTGTTGTAAAACATTTCCAATGGAAAAATGGAAAATTTTCAAAAATCATCTGAAGAAACAACACTTTAAAAATGAAGAAGCCTTTAAAATATCCAAATATGTTTCAGACGATCACGATTATACTGCAATAGGTTCACCGACGTCGACTCCCATCGAGGTCAACCCTATTATAGAACAAACTCTTGTTATTGAGGCTGACACACTAATAACTTACATACTCGAATCACTAGACTCAATGGAATCTACGCAAAAAGCAGCCGTAGCTGATGTTATACCTCCCAATTGTCATTCTACAGCTGATAAGAATGTAATGGCTACCGACAACACAGAAAATTTAAATAATTTTGTAAAATCTAATAGCTATTCGATTAAAGTGCCAACATTTGGTATAGAAACAAAATTTAACCAGTCAACCAAGAAAAAAACTTCCTACTTACCACACAGTTCTAAAAACCAAAAGAAACAGCCGATTAAAAAAAGCTATTCGATTAAAATGCCAACATATGACTTAGAAACCGAATTTAACGTTTCAACCAACACCGTCGACACTGAACAACAAATAACTTCCTCCTTTCCAAGCAGTTCTAAAAACGAAAAGAAAAAACCGTTTAAGAAGAGGACTATTAGAAAATCTTCAAAAAATATGATAGGAAATACAGGGAAAAGTAAGCAAAAGGTCATATCCTCGGGTGTACTTTATTTACAGAACACAAAATGGCATCCATCAACTAAAACTGCTTTAAGTCGCTGTCTTAAGAGATCTAATACAATTGAAACAATAGACCCAATCGATATTAAAGAAGAGTTCGAACCATCTGATATGGAAAGTTTTCAACAAGTTACCACCACAGAGCTTTCATTCGAATATACACCACGTGACATAATCGATTTTCTGTTAGATAATATGAAAAATTATGCAGTTTTGTGGGAATATGATGAACATCCATTCAATGAAGACTATTATGAAGCCATCGAAGAGCTGTGCGCATTAATCAACAGCAAATGGTCAATGAATATAGATAATTTGAAAATGCGTCGCAGCGTAAATCGTGTTCTGCGATTTTACTGTTCTGTATACCCATTGGAAAATGTTGAAAATATTGACCAATTTACTAGCTTTTACGATAAATGTGCTGCTTTTCTGCCTAAATCTGTAAATGATATTGCCTATGCTCGCTGTTCTCATTGTTATAGATGCTACAGAAATGATAGCGACCTGAAAGGTCACCTGTTAGAAGAACAAAAGCATTTGCAATGGCCTTACAAGTGCATACAGTGCAAGGAGTGTTTCCGGGATAATGATGAATATGAGTTTCACAAACGTCTGCCGCACTATAAGGAAGTATTTAGATGTGAACAATGCAGCAAGAAATTTCTTCATCGTAATAAATACAATAGACATATGCTTCTACACCAAATAAAGGAGAGTGACGAACCCGGAAAATACGTATGCAACATATGCAGCAAAGCATTTAAAGCAAGTGGTGAACTACGCAATCATTTAGTATATCACGGAGAGAAAAAACACAAGTGTCATCTGTGTCCGAAAGCGTATTTTACGAATGCTTTACTAAGGCGCCACATAATGAGTCATAATAACGAATATGACTTAATGTGTGAAGTTTGTGGCAAAGGATTTATCTTTCACAATAATCTTAGAGAACACATGAAAAAACATACTGGTGCCAAAGTCACTTGTAACATATGCAATTTGCAATTAAGAAAATCTAGTCTAATGCGTCACTTGCGAACGGTTCATGTGGCATGTGAAGGAACCATCGAAAGTACATTTAGAGCGAGATGTCATAATTATAAGAGAATATTACGACCAATGCAGAAACGCTATAGATTCCGCAATAAATACAAAGCAAAGACCTACTTTTGTAAAATCTGTGACATTCAGTTCGATGGTTACAAATTTATCGTAGAACATAACAAGGAGTTTCATTCCGATTACCCCAAGTTACCGTGTAAAATATGCAGTACGGAATTTAAACAAAAGTTAAATCTAAATCGTCATTATCGACAAAAGCACATGTTACATTCGTATCAAGTTTACAAATTAGTTGAACTAGACGAAGATGTAAATGCAGTGTTAGCAATCAAGGTTGAAGAGTTAGAAAAATTAACGGAGACTTTAGCATATTCATTAAATGGACCAAGCAGTTCAACAGCAGCAAATAAAAGTACAACAATAATAAAGACAGATCCGTCGCCGGATGAGATTTATATTGAAGAAGAAAGACTACACAGTGATACAATACAAGATCAAATAATGGAAGTTGCTGATAACATCGCTACACATGAAATTAAAGTCGACGATGACCATTACATGAATGACTTTTTTACAAATCTTTTAAAATAA
Protein Sequence
MRSCCICMKKVVRGNGTFFNIPKDEKRRKKWCDICKVDFTPNARICEDHFRSADMIKTGQKKLLMPNAMPLVQPLQQVPFHPLLEDDLKRNSYEDQKGILRQNLFNINNNAQPAEIQTSPILQIPLFKSDSKAAATQTNTRYCGTIQVSEFADEYRINCFYCCKTFPMEKWKIFKNHLKKQHFKNEEAFKISKYVSDDHDYTAIGSPTSTPIEVNPIIEQTLVIEADTLITYILESLDSMESTQKAAVADVIPPNCHSTADKNVMATDNTENLNNFVKSNSYSIKVPTFGIETKFNQSTKKKTSYLPHSSKNQKKQPIKKSYSIKMPTYDLETEFNVSTNTVDTEQQITSSFPSSSKNEKKKPFKKRTIRKSSKNMIGNTGKSKQKVISSGVLYLQNTKWHPSTKTALSRCLKRSNTIETIDPIDIKEEFEPSDMESFQQVTTTELSFEYTPRDIIDFLLDNMKNYAVLWEYDEHPFNEDYYEAIEELCALINSKWSMNIDNLKMRRSVNRVLRFYCSVYPLENVENIDQFTSFYDKCAAFLPKSVNDIAYARCSHCYRCYRNDSDLKGHLLEEQKHLQWPYKCIQCKECFRDNDEYEFHKRLPHYKEVFRCEQCSKKFLHRNKYNRHMLLHQIKESDEPGKYVCNICSKAFKASGELRNHLVYHGEKKHKCHLCPKAYFTNALLRRHIMSHNNEYDLMCEVCGKGFIFHNNLREHMKKHTGAKVTCNICNLQLRKSSLMRHLRTVHVACEGTIESTFRARCHNYKRILRPMQKRYRFRNKYKAKTYFCKICDIQFDGYKFIVEHNKEFHSDYPKLPCKICSTEFKQKLNLNRHYRQKHMLHSYQVYKLVELDEDVNAVLAIKVEELEKLTETLAYSLNGPSSSTAANKSTTIIKTDPSPDEIYIEEERLHSDTIQDQIMEVADNIATHEIKVDDDHYMNDFFTNLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00258932;
90% Identity
iTF_00258932;
80% Identity
iTF_00259814;