Cvom017797.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000698.1:180547-185646[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00036 0.018 15.7 0.1 1 23 148 171 148 171 0.97 2 13 0.016 0.79 10.5 3.9 2 23 220 242 216 242 0.89 3 13 0.0012 0.06 14.0 0.5 1 23 376 399 376 399 0.95 4 13 0.13 6.2 7.7 1.7 2 23 449 471 448 472 0.91 5 13 0.015 0.75 10.6 0.1 1 23 544 567 544 567 0.91 6 13 0.0012 0.061 14.0 2.4 2 23 618 640 618 640 0.97 7 13 8.6e-05 0.0042 17.7 1.5 1 23 748 771 748 771 0.97 8 13 0.00016 0.008 16.8 0.1 1 23 820 843 820 843 0.95 9 13 0.0015 0.073 13.8 1.1 2 23 893 915 892 915 0.95 10 13 0.047 2.3 9.0 1.5 1 23 998 1021 998 1021 0.91 11 13 1.1 54 4.8 0.7 1 20 1073 1092 1073 1094 0.94 12 13 0.041 2 9.2 0.0 2 23 1179 1201 1178 1201 0.95 13 13 4.3 2.1e+02 2.9 5.5 2 23 1251 1273 1250 1273 0.94
Sequence Information
- Coding Sequence
- ATGGATAATTTAGAACCTTGGAATATGTTTACCAATGATTTTATGCCAGATGAGGGCAATGTGGATGATGTTAGTGGTGTGGAAGCCGAAGATGGGGAGGGAGGTGGTGAAGATGTGCCATTTTCTATACCCTCACCAGTGCAAGATATGCAAGTTAAAGAAGAGCCTCAAGATGCGGTCGAAGAAATATTCGAGGAAGAAAACGAAAATATACCATTTCACTTTCTCTCTGACGGGGCCAGTAATAATGACAACAATAACGACGACAGTCGAATTCGCAATCCCGAAGAAGATGATGCTCTCTTTGATTTCGGCTTAGAATCATCAAATTCGCAGAATCGCACTATTTTCAATAAATCAACAGTAGCAGAAAAAGATACGAGCTTAGCGCCAGAAGACCAATACTACAATGCAATGGTTAAGTTTGAAGATGCAGTTATTTATATATGCCCGGCCTGTGGTCATGAATTTAGTTCCCAAGATGCCTGGAAAAATCACTTAAACGTAATACATCTTTATAATACACGTCGTGGCCTAAATTTCATACAACTGGATAAACTCTACCATGAATGTATGGAATGTCACAAACGCATCGCTATGCACAGTATGGAGAATTTACTCAAACATAAATTCACCCATCTACCGTTTCGTTGTAGCAAGTGTATGGTGTGTAAGAGACAATATAAATATCGGCAGGATCTTATGGTACATTTGCGAATGACCCATCGTGATGATTTGATAGCTCTTCTCAAGAAAGAACATACAAAACCTAAAAATGCCCATTCACAGCCACAAACTATTCGTTCAATACTGAGCAGACCAGATGGCAGCGGAGGCCCTCAAAGCAGCATTAGATCAAATATATCCATTGGAGCTATTAAGGAAAATGCTGCAGATTTATTTGATAATATCGAAGTTAAAAATGAAGTACTCAATGAAGATGAAGATGATACAATGGGCGAAGATAGTCTGCCGCCACCAGCCAAACGACCAGCTATGGATTTGCCTATTTTTCTCGAAGACGGTTCTACAAATGGTTCAGCGGGCGATCAACCAATACGAAGTACAAACAAATCTTCTGCAGTGACGGATGATATTGACGGTTCACTTGAGGAATATGTTCTATTCACATGTCCGCAATGTGGTACCGAGTGTGAGACACAAGCTCAGTGGCGTCAACATATTGAATATGTACATGAATTTGGCACAAGGAGGGGTCTTAATTTTCGAGAGCTGCTTAATCAACAGGCTCAATGCATGGGTTGCAATGTGATCCTATCAAACTCTTCGATACGCAGTCTACAAGTACATAAATTCAGTCATCTTCCCTACAAACAATGGATGAGTTGTAAACTTTGTTTTACATCTTTCAATTCAAATCGCGATATTATTAAACATTTGGCCGCCAAGCATCATTTGGTATCGGAAAATAATGCAACAGCATCTGCAGCCCAAAATAACGAAGATGATAGTCAAGAAGCATTTGGCTTTGGTAGTGGTGGTGGCGGCGGTGATGATTATGATGATGGTGGTAGTTACGGAGCGTCGGATAGTAAAAATCTAACATCAGAAAAGGATATGTACACAACGAGATTAGAAGAACGTGATGTATTCGAACAACATATAACGTACATTTGTCCAGCATGTGGTAAGGAATATAATGATAAGAAAGTGTGGCGTAAACATATTGTAGAAGTTCATAAGTTAGGTGAATTGGAAAATTTAAATTTTGAAAATATCAATGATCGTCAGCTGAAATGTAGGGAATGTGATAAGATTATAACGAATGCGTATGGCATACAAAATGCCCAACAACATCGTATGACTCACATGCAGTATAAATCCTTTGCCAAGTGTCGTTTATGTCGTAAAACTTATACTGATCGCAAAGGTTTGATCAAACACTTGAGAAACTCTCATAAACTGGGGGCACGAGGAGGTTTTGGACAAATTAATCCTGTCCCAGCGGCAGCAAATTTTGGTGGTGGCGGTGCCACCTTCAAGCCATTTGTCAAAAAACCATATAAGATAGCTCATTATCCACCTAAAGAAATTGTTAGACTTTCAAATTATACCTATGAAATTGTACATTTAATCGAAGACGATGATGATGACGACGATGTGACCGTAGTTGGCGGTTATGACTTTGCTAAAGGTGATGCTCATTTGTATAGAAACAATAATTCACCATATAATGCACCACCCCCAAAAAGGAGTAATAACATGGAACAAATTACCAGGCATAAATGTGTGGATTGTGGTTCCATATTTCCCACGCCGCAATCACTCCAACATCACATTAGAAAAGAACATGAATTTCTCGATTATCAAAATTCCCCTTCAAATCAGGGAACGCAAAATGAGGAAAAATCAAATGATACTGATGATTTATTAGTGCCCAGTCGGGATGTTGATGTCCAGCCCGATGAACACATCACCATGGACTGTAATTTCATTTATCTATGCCCTCAGTGTGGTGTAGAATTTCGTTCACAAATCCAGTGGCGTCGTCACATTAATATTGAGCATAACTTTGATAAACGTGACTCTTTAGGCTTTCGTCCTTTGGATAAATTTCGTTACCAGTGTAAACAATGTAAAGATACGGTGACGAGTTCGAAGCTTAAGGGTCTGCAAGACCATAAATTCAGACATTGTCCCTACAAACTCTACTTGAAGTGTCTGCTGTGCGGCCAATCGTACAATCATAAACCCAATATGATTGCCCATCTACGACAAAGACACAACATAGTGGAACTTATGGATGGTGGAGGAGCAGGGGGAGGTGGGTCGTCCATGGACTCTTCGCAGCAAAGACATTCATCCAATTCACATAATAACAGCTCATCTGGTAAAGAGTTTAATGATGCGCCAGCCAGACCCATACGAAATTCTGATCCTTCCAATAACAATACAAATCGACCACCGGGTTTGAAGACAGTAGAGGATGTTATATCTTTTCACAATGCAGTAGATCATGAAACTATAACGTACCACTGTCCCTCGTGCAATGAGAGCTTCGACTCGCACGTCTTTTGGCGCAAACACATTGTGGAAGCTCACAATCTGAATAGTAGAGAAGGTTTGAATTTCCGGCAATTGGATGAACATCATTACATTTGCCTACAGTGCTATAAGCGGGTCACGGTCACCCACACCAAGGGCGCCATTGGTCAATTGCAGTCGCATAAATTTAGACATTTGCCATACAAATCATTCAGTTGTACAGCCTGCCAAGGAGAATTCGTACGCAAACAAATGTTTTTCAAACACTTGGATAAAAACACTAACAAGTGTTCTGGCATTAATCCGGATGCCAGTTACTTGGATGCTGGCGACACCAGCACAGCACCAAATAATGACGATGATAGTGCCGTTGATTTTAATGCTACTATGGCCGAGCCCGCCAGTGGTGGCAGTACTTCATCATCAGCAAAATTCTCTTGGCCTACTCGCGCCTCACTGCCGGCACAATCTAATGCTAATGTTGCTATTAGCGAATCAATTTCGGAAAACCAGGGCTGTTTTACCTTAAATTGTCCTCAGTGCGGGGCAGATTTCGAAACTACTAGAGGTTGGCGTGAACACATAAATATCGAACACAATCTCAACAATAGAACTGTATTGAATTTCAAAAAAATCAGTGCCAAACTACACGTTTGCTTGGAATGTAACGAACATGTCAATGGGCGCAAACTACGCGATCTTCAGGTGCACAAATTCAAGCACTTACCTTATGGAGCCTATTTGCACTGCCGCTATTGTTCCATGAAATATTTCCACATCAGCAATATGCAGGAGCATTTGAAGAATAAACATCCCAATATGGTGCAAAAAATGAGAAACTATGAAGACGATTGTGTCACCCTAGATGAGGATGATGATGGCAACGCAGATGGTGTTAATGATACTGAGGCGGGCCTGGATGGTGATGCTGACGAAAGTAATCACTGTTTAGAAGACATAGTCGATATGGACTTGTTGGAAGCAGAGGCCGAAATTGAAGAAGTTGATCCCGATAATGTTGAATCTGAAGAACAATATCTTTTAGGCTAA
- Protein Sequence
- MDNLEPWNMFTNDFMPDEGNVDDVSGVEAEDGEGGGEDVPFSIPSPVQDMQVKEEPQDAVEEIFEEENENIPFHFLSDGASNNDNNNDDSRIRNPEEDDALFDFGLESSNSQNRTIFNKSTVAEKDTSLAPEDQYYNAMVKFEDAVIYICPACGHEFSSQDAWKNHLNVIHLYNTRRGLNFIQLDKLYHECMECHKRIAMHSMENLLKHKFTHLPFRCSKCMVCKRQYKYRQDLMVHLRMTHRDDLIALLKKEHTKPKNAHSQPQTIRSILSRPDGSGGPQSSIRSNISIGAIKENAADLFDNIEVKNEVLNEDEDDTMGEDSLPPPAKRPAMDLPIFLEDGSTNGSAGDQPIRSTNKSSAVTDDIDGSLEEYVLFTCPQCGTECETQAQWRQHIEYVHEFGTRRGLNFRELLNQQAQCMGCNVILSNSSIRSLQVHKFSHLPYKQWMSCKLCFTSFNSNRDIIKHLAAKHHLVSENNATASAAQNNEDDSQEAFGFGSGGGGGDDYDDGGSYGASDSKNLTSEKDMYTTRLEERDVFEQHITYICPACGKEYNDKKVWRKHIVEVHKLGELENLNFENINDRQLKCRECDKIITNAYGIQNAQQHRMTHMQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGARGGFGQINPVPAAANFGGGGATFKPFVKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTVVGGYDFAKGDAHLYRNNNSPYNAPPPKRSNNMEQITRHKCVDCGSIFPTPQSLQHHIRKEHEFLDYQNSPSNQGTQNEEKSNDTDDLLVPSRDVDVQPDEHITMDCNFIYLCPQCGVEFRSQIQWRRHINIEHNFDKRDSLGFRPLDKFRYQCKQCKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVELMDGGGAGGGGSSMDSSQQRHSSNSHNNSSSGKEFNDAPARPIRNSDPSNNNTNRPPGLKTVEDVISFHNAVDHETITYHCPSCNESFDSHVFWRKHIVEAHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFSCTACQGEFVRKQMFFKHLDKNTNKCSGINPDASYLDAGDTSTAPNNDDDSAVDFNATMAEPASGGSTSSSAKFSWPTRASLPAQSNANVAISESISENQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKISAKLHVCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRYCSMKYFHISNMQEHLKNKHPNMVQKMRNYEDDCVTLDEDDDGNADGVNDTEAGLDGDADESNHCLEDIVDMDLLEAEAEIEEVDPDNVESEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01259649;
- 90% Identity
- iTF_00045700; iTF_00259333; iTF_00200295;
- 80% Identity
- -