Basic Information

Insect: Calliphora vomitoria
Gene Symbol: grau
Assembly: GCA_942486075.2
Location: CALNXM020000543.1:287571-291502[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.1 1e+02 3.9 0.6 6 23 260 277 260 277 0.93

2 9 0.00015 0.0072 16.9 4.1 1 23 283 305 283 306 0.94

3 9 0.00033 0.016 15.8 1.5 1 23 314 336 314 336 0.96

4 9 3.8 1.9e+02 3.0 1.4 2 23 345 370 344 370 0.85

5 9 0.015 0.73 10.6 0.7 3 23 377 397 376 397 0.97

6 9 0.042 2.1 9.2 1.0 2 23 406 429 405 429 0.93

7 9 8.4e-05 0.0041 17.7 2.6 1 23 436 459 436 459 0.97

8 9 2.9e-06 0.00014 22.3 1.1 1 23 464 486 464 486 0.97

9 9 0.00038 0.019 15.6 3.7 1 23 492 515 492 515 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.1	1e+02	3.9	0.6	6	23	260	277	260	277	0.93
2	9	0.00015	0.0072	16.9	4.1	1	23	283	305	283	306	0.94
3	9	0.00033	0.016	15.8	1.5	1	23	314	336	314	336	0.96
4	9	3.8	1.9e+02	3.0	1.4	2	23	345	370	344	370	0.85
5	9	0.015	0.73	10.6	0.7	3	23	377	397	376	397	0.97
6	9	0.042	2.1	9.2	1.0	2	23	406	429	405	429	0.93
7	9	8.4e-05	0.0041	17.7	2.6	1	23	436	459	436	459	0.97
8	9	2.9e-06	0.00014	22.3	1.1	1	23	464	486	464	486	0.97
9	9	0.00038	0.019	15.6	3.7	1	23	492	515	492	515	0.97

Sequence Information

Coding Sequence: ATGTTGTGCTGTGTGTGCTTATTGGAAACTCATAAAATGCTGGGCATTTATGATGAAAAGTGGAAAAACCTCAACATAGCCAATATTATAAACAAATATTTTTGGTTCAAGACACATCCAGATGATTCACTTACATCCCATATCTGTACAATATGCTGGCAAAAAACTCAAGATTTTCATGAATTCTATCAAGGCGTGGAAAGGACACATAAGTTATTCCAACAAAATCAACATAAATTCACTACTATCAAAGAGGAGGAGGAAATGACCACTATCAAACAGGAGGAGAACCCAGAAGAGATTACATATGAAAATAATCTAATGCAAATCGAAATAGATATTAAAGAAGTTCCAGAAAATGAAAAAGCTGAGACTACAGAGAAAAATCCATTAGAAAATGAACAAATTTATAGTGATTGTAATGAAGATGAGGACTTTGATAATGAATGTAGCAGCACCACATCCGATGAATACGAGCCCTCAGAAATTAGTGAACCCGAAGATATACTAAATGAAGAAAAAACGGAAAATGCAATTAAAAAGAAATATGCAACAAGTAAAAGTAAACGCAAAGATACAAATAAAAATGAGAAAAAGAATGATACGCCCAAAAAGAAAAGGAGTTCACACCGTTTAGATCCAATACTGACAGAGCAATtgattaaaaagcatataccaatgttgtgtgatttgtgtgtattttcgggcaacacattctctgatattgtaggacacttcaaagagcatcatccaaacgtacaaccctatataatgtgttgtaataggaaatttactagaagttattgtatcgatcaacatgcaataatacacgaaaatccagattcatttagATGTAATGAATGTAATAGATCATTTACCACAACCTATGGATTGCGAACACATAACTTAAATCACCATGCACCTGAGGAGAAGCGTATACATGCTTGTGAATTTTGTCCACGACGATTTGGTAGGCGACAGTTACTAGAAGTCCATAGACAAACACATATACCAAAAGATGAATGGACCATAACATGTACAAAATGTACAACACGCACAGTTAAATTTGTTTCCCAATATTTGTTGAATATACATAATAGCATGTTTCATAGAAGAGAAGcaaacatttgtcatgtctgcgcgaaagaaataaaagataaaaaagcatttgaaaagcatgtacgtgcacattttgaagatagtggaccacgggttaaatgtacacatcctaactgtgaccgctggttaaaggatgaagataatttaaaaactcacatgcagctacataatctggcgggaaaaacgtacaaatgtTCGGAATGTGATAAGGAATGTCCAAATCGAAGGGCACTGACGAATCATAAGCGTTATGTCCATTCAAATCCAACATTTCGTTGCGAAGAAtgtgataaaacttttaaaaaagctatttcattaagggagcatatgactcaacatacaggtgaaacattatacagttgtcccttctgtaccagaacttttaattcaaatgcaaatatgcatgctcataaaaagaaacaacacccgattgaatggaaagaattgagaagaaaaaaTATTGGTCCATTACCAAATTAA
Protein Sequence: MLCCVCLLETHKMLGIYDEKWKNLNIANIINKYFWFKTHPDDSLTSHICTICWQKTQDFHEFYQGVERTHKLFQQNQHKFTTIKEEEEMTTIKQEENPEEITYENNLMQIEIDIKEVPENEKAETTEKNPLENEQIYSDCNEDEDFDNECSSTTSDEYEPSEISEPEDILNEEKTENAIKKKYATSKSKRKDTNKNEKKNDTPKKKRSSHRLDPILTEQLIKKHIPMLCDLCVFSGNTFSDIVGHFKEHHPNVQPYIMCCNRKFTRSYCIDQHAIIHENPDSFRCNECNRSFTTTYGLRTHNLNHHAPEEKRIHACEFCPRRFGRRQLLEVHRQTHIPKDEWTITCTKCTTRTVKFVSQYLLNIHNSMFHRREANICHVCAKEIKDKKAFEKHVRAHFEDSGPRVKCTHPNCDRWLKDEDNLKTHMQLHNLAGKTYKCSECDKECPNRRALTNHKRYVHSNPTFRCEECDKTFKKAISLREHMTQHTGETLYSCPFCTRTFNSNANMHAHKKKQHPIEWKELRRKNIGPLPN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200304;
90% Identity: iTF_00259319;
80% Identity: -