Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000742.1:51693-56524[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.2 2.6e+02 2.6 2.6 1 23 395 417 395 417 0.89

2 7 0.00073 0.036 14.7 1.5 1 23 423 445 423 445 0.97

3 7 0.00028 0.014 16.1 0.1 1 23 451 473 451 473 0.97

4 7 0.00056 0.027 15.1 4.8 1 23 479 501 479 501 0.98

5 7 0.00076 0.037 14.7 3.4 1 23 507 529 507 529 0.98

6 7 0.00017 0.0083 16.7 1.0 1 23 535 557 535 557 0.95

7 7 7.4e-05 0.0036 17.9 1.7 1 23 563 585 563 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.2	2.6e+02	2.6	2.6	1	23	395	417	395	417	0.89
2	7	0.00073	0.036	14.7	1.5	1	23	423	445	423	445	0.97
3	7	0.00028	0.014	16.1	0.1	1	23	451	473	451	473	0.97
4	7	0.00056	0.027	15.1	4.8	1	23	479	501	479	501	0.98
5	7	0.00076	0.037	14.7	3.4	1	23	507	529	507	529	0.98
6	7	0.00017	0.0083	16.7	1.0	1	23	535	557	535	557	0.95
7	7	7.4e-05	0.0036	17.9	1.7	1	23	563	585	563	585	0.96

Sequence Information

Coding Sequence: ATGGCAACAAAAGTTTTAAATATTCAGGATTTTGCTGGATATATTAAATGTGGAGAAATCCTTAAATCACCTTTACCGAATTATCAGTATCCATTTGTTTTGAAATGTTATCAATGTGATAAAATCAATTTCATTTTGGAATCATTTATTATACATGTCCAGGAACATTGCAAAGGGCTCTCAGTTGCAAGTGAAAATATTGATATAAAAATGTTAAATGAAGAAGAAGCCGACTGTGAAAACTTTGAAAACCCTTTAATAAAAGTGGAGACCATTATTATGGAAGTGGATGATCCTCTAGTTGGAATTAAAGATGAAGTTACTGAAGAAAATTCTAATGGTAAAACTAATATTAATAACATTGAAGATGACGAAGACTTTGAAGATAATTCGTGCGATTCAGATGAAGACTTTCAAACAGACGATACAGATACGGAAGAGGATGAAATAACAACAAAATCAACTAAGTCTACTAATAAGAAAAAGAAAAGTGTAATTCCTCCTACCGTTGAGACATTTATGAAATCCAAACCAAATATAAAAACTTTAATTGAACTGTATAAAAATAAACCAAACTTGTGGAATAAAGATTTACATTTTTATCGTCTTAAAGATAAAAGGCAGGCAACTCTCGAAGAAATTACTAAAGATTTAAATAATAAACTAAATTCAACATTAACCTGTAAAGAAGTATCAGATATTATTTCTTACATTTATCTTAAACACCGAACAGATTTCAAACGGCTTCGACGCTACGAAGAAGACGATAGGTATTCAAAGGACAAAAATTATAAACGCTCATGGTTTTTTGATGACTTATATTTCCTAAGGCCTCAACAAGTTATACAACTACAGAAATTGGATTCAAATTTACCCGATTTAACAAGTGAAGAAGTGATTCAAATAATACAAATATATAGAGAATTTCCACATCTATGGAACTCAAATCTAATTGAATTTATATGTTCAAATAAACGGCATGCAGCTTACATTGAAATGTTGAAGAGTTTGGAAACAAAAATGAACATTAAAATAAGTATCACAGTATTGGAAGAATACTTACGTAGCATACATAATTATTTTTCAAGAGAAAAACGCCTTAGGAAGAAAAATACAAAAGCAAAAAAACATGTAGACGAATACTATGACCAACTCTTGTATTTATTTGATCATGTGGGACCATTCAACTGCACCCAATGTAAACGAGTTTTGACAAAGCCTTTACTATTTAAATTTCATAAATCCACCCATGATGATTCTGTACCATTTATATGTTCTCAATGCAATAAGGAGTTCAAAACAATTCAATCATATACCGTTCATGCTAAACGTCACTTTGAGGATCTCGAATTTGCATGCAGTATATGCGATAAGAAATTCGTAGCTTATGGAGTTCTTCGACTGCACATGTTAACACACACTGGCGATAGGCCATATTGTTGCGAAATATGTGGTGCTTCATATCGTCAAGTTCAATGCTTAAATAGACATAGGAGACGTCATTTGAAGCGATATTCCCATACATGTTCTATTTGTTCTAAAGGGTATTATTCTAAAAAGACCTATGAGGATCATATGAATTCGCACATGAACATAAGACAACATATTTGCCAACTGTGTGGCAAAGGATTTATTACCAGCAAAGCATTAAAGACACATTCCGTCACTCATGAAGATGCTAGAAATCATGCATGCAAGTTGTGTGGTAAAACATTTAAACTTAAAATTGGTGTATTACAACATATGCGAACGCATGGCACCAGAATTGAAATTGATGATAAAAATTGA
Protein Sequence: MATKVLNIQDFAGYIKCGEILKSPLPNYQYPFVLKCYQCDKINFILESFIIHVQEHCKGLSVASENIDIKMLNEEEADCENFENPLIKVETIIMEVDDPLVGIKDEVTEENSNGKTNINNIEDDEDFEDNSCDSDEDFQTDDTDTEEDEITTKSTKSTNKKKKSVIPPTVETFMKSKPNIKTLIELYKNKPNLWNKDLHFYRLKDKRQATLEEITKDLNNKLNSTLTCKEVSDIISYIYLKHRTDFKRLRRYEEDDRYSKDKNYKRSWFFDDLYFLRPQQVIQLQKLDSNLPDLTSEEVIQIIQIYREFPHLWNSNLIEFICSNKRHAAYIEMLKSLETKMNIKISITVLEEYLRSIHNYFSREKRLRKKNTKAKKHVDEYYDQLLYLFDHVGPFNCTQCKRVLTKPLLFKFHKSTHDDSVPFICSQCNKEFKTIQSYTVHAKRHFEDLEFACSICDKKFVAYGVLRLHMLTHTGDRPYCCEICGASYRQVQCLNRHRRRHLKRYSHTCSICSKGYYSKKTYEDHMNSHMNIRQHICQLCGKGFITSKALKTHSVTHEDARNHACKLCGKTFKLKIGVLQHMRTHGTRIEIDDKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922441;
90% Identity: iTF_00200281;
80% Identity: -