Cvom011680.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000307.1:953094-956451[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.016 0.8 10.5 2.6 2 23 579 601 579 601 0.93
2 8 0.047 2.3 9.1 6.2 1 23 608 631 608 631 0.93
3 8 0.0001 0.0051 17.4 4.1 1 23 636 658 636 658 0.98
4 8 6.7e-06 0.00033 21.2 0.5 1 23 715 737 715 737 0.99
5 8 1.1e-07 5.2e-06 26.8 0.2 1 23 743 765 743 765 0.98
6 8 0.18 8.9 7.2 2.4 2 23 771 792 770 792 0.95
7 8 0.0047 0.23 12.2 3.8 1 23 836 859 836 859 0.93
8 8 0.024 1.2 10.0 6.4 2 21 866 885 865 888 0.94

Sequence Information

Coding Sequence
ATGGAAAAAAAGAGATGTGCCTTAGGTTGCCCACCAGCTAATAATCTTTATATTTTTCCTAGTAGGAAAACTGACAATGAAAGAAGAAATTTATGGCTGGACTTTTTTGATATTGAAGAACCAAACATGGAGAGTATATTTGCATGTAACAGGCACTTTTCATATTTACAAACTACTAAAAAAGGTTTAAGAACTGATGCAGTTCCTGACATACCAGTAATAAGCGATACATTAGCGCTTCCTTTTAGAAGAAAGCCAAAGAATTGGAGAGATCCAGATTTCCCTATACTTGAAACTGTAGTATTTCCGCAAAATCTTATTGATCAATCTAACACTATACAGCCTGTGATACAAATTCCTATGATCAAATCAGTATCTTGCTCGATGTGGACCCAAACTAATACACGTCTCTGTGGTTCAGTACAGATTTCAGATTTAATAGAGGAATACCGCCTTAATTGTTTCTATTGTAGTGAAATATTTCCATTAGAGAAATGGTCAGCATTCGTTGTTCATTTAAGGGAGAAGCATTTCAAAAAAGAAGAAGCCTTTAAAATGTCTAAATATCATTCACAGGATCATGACTATACACCTATAGGATCTCCATCAACTTCGCCAATGAAGCCAGAAATAAAATATAATATTGTTTCTAATCCTATAATACAAATACCACCATCTCAGCCGGTTTTCAAAGAACCTATCATACTACCGCCTTTATTGCCCAAACCGCAGAAATGTAATAATAAACCACTAAAATTAAACCCACCACCACCTTTATTGTCCAAACCACACCAGTCCAGCAATAAGACATTTAATATAAGTTTAGCTGATAAACTAATTAAACTCTTGAATGAAACAGTTTTAAATAAAAATTTTCTAAACACAGAAGAGGATAACATTGTGATCATAAAAAATTCTGCATCTAACAACATCGAAACAAGTAATTTTTTACAAAAATTTATGAATTGTGAAAATATAAGTCCAAAAAAGACTGCGTTTAGTGCTAAATTAAATACTCCAACTTCAACAACTTCGTTGCCCAAAAATACTCGTCCAATCTATACTCTAAACAATGGCCAACAGAATATTCCTTCGAGAAGGCATTCATTTTCACGCACCCTAAAACCATTAGTTAAAAACAAGATGACTAGACTAGTACATAAGAGAGTGGCCCAACAAACCTTAAAAAATATAAATGTATTTGAAAATGTGTATAAAACTGTGAAAACAAGACCACCAAGGGTATTGGATTCGGGCATACTTTATTTAAAGGATTTTGATAGTAACAAAGTTAATGAACGGCAAAATTCAAATGAAACCCCTCTAAGTCGATTTCTTAAAAGAAGCAGTACGGTTACAATTAAGCCGGAACCTGAAAATAAAGCATTTTCTGTTGACAATTTCCATCAAAAGCCGATCGAGCTTGTTTTTGAGTATACACCAGAAGACATCATGGTTTCACTGCTAGAGAGTATTCAAAATTATCCAGTATTATGGAAATTCCATGAACAACCTTTCAATAAAGACTATTACAAAGCCATAGAGGAACTATGTCAAATAATTAACGATAAGTGGTCACTAAATATAACTTCGCTGAAAATGAGACGCAGCATAAATCGTATATTAAGATTTTATCGTTTCATGTTGCCTAGTGAAAATATTGAAAAATTCATTGATTATTTCGACAAATGTGCACTTTTTCTACCCTCATCTATAGATGAAATTCCAAGGGCTCGCTGTGACTACTGTTCTATATGTTACAAAAGCGATAAAGAACTGAGAAAACATTTAATAGAAAAACACAAGTGTTTAAAATGGCCATACAAATGTCAACATTGTCACGAACGTTTTAGGGAACGTGATGAATATGAGCTGCACAAACACCTGCCACACTATGTGGAAATATTCAAATGTGAACAGTGCAGTAAACGATTTAATCGTCGTTATTTATACAATAAACATGTAAATTCACACCAACGAACAATACAGCGGAATATTCCCACGAGAGCAGATTCGAGTTCACTCAGCCAAGGGCCGTCAAATCAAATGCTGTTACAACAACAACAGAGACACATAAAGTCAGCCAAACAGAATATAGAATCAGCTAAATACTCGAATGAATTAACTCACGAAGAGAATTTATTTAAATGTCCCATTTGCCCAAAAGCTTATGTATTGAAATCTACTCTGAAGCTACACTTGAAGAAGCATCGTAACGACTATGACTTCATATGTGAAGTCTGCGGAAAGGGATTTATCCGTCAATCAAGTCTCAATGAACACATGAATACACACACTGGCGCTAAAATAACATGCAATATTTGCAATTTAAAACTAAGAAAATGTAGTTTATCTCGTCATCTGCGGCTTGTGCATGTTGCAACTGAAGGCACCATTGAAAGTACATTTAGAGCGCAATGTTATCATTATAAAAAGTTTATGTTTCCAAAATCTCAAAAATCAAATATTAAAACAGTAAAAGGAAAAGAAAAAATGACGCGGCGATACTTTTGTAAAATTTGTAAAATACACTTCAGCCGTCTTAAACAGCTAAAAGACCACAACAAAGAACTTCACTTTGATGTAGAAATGATACCGTGCAAAATGTGTAATATAGAGTTTAAACATATGCATAATCTTAAGCGACACTATCGTTGTAAGCATAACCTACACATGTATCAAATATTTAAATTAGTGGATCAAAACGAGGATCTAAATACCGTGTTGGCAATACAAACGGAAGATTTAGAGACTGAGCAAAACAGATACATATCTCATGCACTAAATAAACAGCACGACAATGTAAAACGATCAACATTTTCTACTGGTGAGAATTACTTTGAACCGGAGAGAATACACAGCGATAAAATACAAGATGAAATAATGAAAGCGGTAGAAAATATTGATAAACAAGAAATCAAAATCGATGATGACCATTCAATGAACGATTTTTTTACAGATCTCTTAAAACCGTAG
Protein Sequence
MEKKRCALGCPPANNLYIFPSRKTDNERRNLWLDFFDIEEPNMESIFACNRHFSYLQTTKKGLRTDAVPDIPVISDTLALPFRRKPKNWRDPDFPILETVVFPQNLIDQSNTIQPVIQIPMIKSVSCSMWTQTNTRLCGSVQISDLIEEYRLNCFYCSEIFPLEKWSAFVVHLREKHFKKEEAFKMSKYHSQDHDYTPIGSPSTSPMKPEIKYNIVSNPIIQIPPSQPVFKEPIILPPLLPKPQKCNNKPLKLNPPPPLLSKPHQSSNKTFNISLADKLIKLLNETVLNKNFLNTEEDNIVIIKNSASNNIETSNFLQKFMNCENISPKKTAFSAKLNTPTSTTSLPKNTRPIYTLNNGQQNIPSRRHSFSRTLKPLVKNKMTRLVHKRVAQQTLKNINVFENVYKTVKTRPPRVLDSGILYLKDFDSNKVNERQNSNETPLSRFLKRSSTVTIKPEPENKAFSVDNFHQKPIELVFEYTPEDIMVSLLESIQNYPVLWKFHEQPFNKDYYKAIEELCQIINDKWSLNITSLKMRRSINRILRFYRFMLPSENIEKFIDYFDKCALFLPSSIDEIPRARCDYCSICYKSDKELRKHLIEKHKCLKWPYKCQHCHERFRERDEYELHKHLPHYVEIFKCEQCSKRFNRRYLYNKHVNSHQRTIQRNIPTRADSSSLSQGPSNQMLLQQQQRHIKSAKQNIESAKYSNELTHEENLFKCPICPKAYVLKSTLKLHLKKHRNDYDFICEVCGKGFIRQSSLNEHMNTHTGAKITCNICNLKLRKCSLSRHLRLVHVATEGTIESTFRAQCYHYKKFMFPKSQKSNIKTVKGKEKMTRRYFCKICKIHFSRLKQLKDHNKELHFDVEMIPCKMCNIEFKHMHNLKRHYRCKHNLHMYQIFKLVDQNEDLNTVLAIQTEDLETEQNRYISHALNKQHDNVKRSTFSTGENYFEPERIHSDKIQDEIMKAVENIDKQEIKIDDDHSMNDFFTDLLKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00259263;
90% Identity
iTF_00045648;
80% Identity
-