Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020001568.1:565969-570496[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00049 0.024 15.3 3.9 2 23 87 109 87 109 0.96

2 9 4.8e-05 0.0024 18.5 0.1 2 23 115 136 114 136 0.97

3 9 0.97 47 4.9 1.5 1 20 177 196 177 198 0.91

4 9 0.097 4.7 8.1 0.0 2 23 688 710 687 710 0.95

5 9 0.00011 0.0055 17.3 0.4 1 21 798 818 798 819 0.95

6 9 0.12 5.7 7.8 6.6 1 23 827 849 827 849 0.97

7 9 3.7e-05 0.0018 18.8 7.2 1 23 855 877 855 877 0.98

8 9 0.00073 0.036 14.8 2.8 1 23 883 905 883 905 0.97

9 9 0.058 2.8 8.8 2.5 1 20 911 930 911 932 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00049	0.024	15.3	3.9	2	23	87	109	87	109	0.96
2	9	4.8e-05	0.0024	18.5	0.1	2	23	115	136	114	136	0.97
3	9	0.97	47	4.9	1.5	1	20	177	196	177	198	0.91
4	9	0.097	4.7	8.1	0.0	2	23	688	710	687	710	0.95
5	9	0.00011	0.0055	17.3	0.4	1	21	798	818	798	819	0.95
6	9	0.12	5.7	7.8	6.6	1	23	827	849	827	849	0.97
7	9	3.7e-05	0.0018	18.8	7.2	1	23	855	877	855	877	0.98
8	9	0.00073	0.036	14.8	2.8	1	23	883	905	883	905	0.97
9	9	0.058	2.8	8.8	2.5	1	20	911	930	911	932	0.94

Sequence Information

Coding Sequence: ATGTTGGCTGCAGTTAAAATTAAGGAAGAGCCTCTTGATGAAATTGAAGATTTACAGGAAATATTTAAGCAAGAAGAAGCTTTAATGAAGCAACAATTTAATGCTGATCTGCTGGGCCAAAATTTGCCTTCTAATAATTTCCACATTGTTGAGGAAGAAGACAGCTTTATTACCGTTAGTGCTGCCGACATGAAGTGCCAAGATGAACTCCAATTCATAGATTCCATAAATAACTCGGATCCCAACAAATTCCGGGGTGTATGTTCCAAATGCCTAAAAACATTTACAAATCGTTCCCAATTCCTGAAGCATACCAAACGAAACCATTGTATAACCAAACAAAAGTGTCCGGTATGTCCGGTTACTTTCATAGATTCGTCTTCTTTGCTAAATCACTTAAATTTACATCGTGATAATTCTTTCTTTTGTACTCTGCATTGCGGTGCCAATTTTGCCACACTACCCTTGTGTGAGGAACATGAGCTAAAGGAACATAAAGTGCAAGCACCGCCAAAAATTCGCTATAAACATTTTTGTTCATTCTGCCGCGAGGGCTTCAAGACCGAACTTCAATTGCATGTACATTGGCTGCAACAGAATCAAGGCTGTGGCAAACTAATGCAGGATGTTGTATTACATTCCACTAATGTTGCCAACAATTACAATACAAATTGTAAAAATATAAAAAATCTCTCAATAGAGAAACAATTGCAGCCGGTCACAAAAAATTCCATGTCAATCATACCCATTACCAAATTAAGATTGAAATCGGCCACACCCTCACCACAAACAGCGAATAAAAGACAAATTATGGACCAACCAAATGAGGAAACAGACACACTCAATAAACGTTTTAAAATGCTGGACAAAATTAAAGCAGAAATAGAAACCAATCAATTGTCCTTTAATTTTGACACTGATATACAAATAAAGGAAGAACCTTTAGATGAATATGAAACAAATATGACTAATAATCTAATACCGGAAGTTATAATCAAAACTGAAGAAGAGGGGGACAAAACTGAAGATGAAGCTGTCAATGAAAAACCCCAAATGAAGTCTTTAATACTTAATAATATGATAGGTGCCGCAACAAGTGGTAAATTTATACCCCTAGAAAAGTTTGTATGCTCAGAAAATAGCAAAACAGAGCAAAAACCCGAAATGAAAACATTTTCCATAAATAGTCTGGTAAAAGCTAATGTAAATGGTAAAATGATAAATATGAATAATCAAAATATACCGGTATTGAAACTTATTAATAACAATAACAACAATATAAATAATAATAGCCCAAAAACGGTGGTAAAAAATGAAAATTTTAGATTTATTAAAATAATGCCGGCTCCAATGCCAACAGCTAATAGCAGTAAATCTCTTAATAACTTTAATTTTGCCAATATAAACAATGCTGGTTCGGGAAAATTAATGACACTCAAACTGGCCAATGGCCAAAGTCTATTAAATAACACAGATATCAAACCTTTGCCCACAAGTGGTTTACAAATTATAAAATTCCTACCCAATACCCAAATAATAAGCATGAAAGCCGCCAACAACAATACCACTAACTTCATGGGAAACAAACAGCCTATAATTTTAAAACTTAAAAATGCTCCTACTTTAGCTGTTAATAAACCAACTGAAACAAAAGCATGCACAGCCACCCCACCTAACAGTAGCACCTCTCCCACTGTTTCCATAAAATTGAACTCCCTCGAAGAAAATACCACCATAGATGCTGAAGACTTTAAAAAACTGCAGACTGAGGCTCTGATAAAGGCCGAGGAGCATCGCAAAAACTTTTATGTGCCCAAAACACGTCTCATGATTATCGAGAATATACCGGAGAAAAAGCAATTGATCGATAGCATGAAACAGAAAATCGCCGATGTTGAAACAAGAACTACCGAACAGATTCAGGGTAAACCGGCTGGAAATTTCATATTAAAATCTAAGGAATGCGATGAACCGTCTTCTTTGTATTTGCCTATACTTACCACACTGGATGTGTCACTGGTAGAGGCACGCTATCAAAATCCCAACTATTGTTATAAATGGATTTGTCCCTATTGTCTCAAGGATTATGAGATAAAGACTGCTTTAAAGTTGCACTTGATCCGGGCTCACAATTTGAATAGTCGTGATATGGAGAAGATAAATGTGCAGGCGAAACCGTTTGTATGTGAAGAACAACTACCGTTAGAAGACGACATCAAATCCGAAATAAAAGAAGATATTAAACCACAAATTAAAATAGAACCGCTTTCACAAGACACCGATTCTCAAACCTTAACAAACTCTGAAACAGAATCCTTAATAATTGATACTTCGTCTTCCTCATCGCCAAAACGCCTCAAAGCGATCAATATAAAACAGCCAAGACCACGTTACGTATGTGACAAATGCGGTCGTACTTGCTCTTCAAAGACCATGCTCAACGATCACATCTTGGCCAATTGTAGTCGTGAGCCACAGTATTCGTGTAAAGAATGTAGCAAGAAATTCTTTTCGCATGGCACTCTACAATGTCACATGACCATACACACCGGTGAATTGCCGCACAAATGTAATTATTGTGATAAACGTTTTCGCACTCGGGGACAGGTGAAGGTGCATCATCGAACGCATACCGGAGAAAGGCCGTTCTTTTGTCAGGTTTGCTCTCAACGTTTCACTCACCGAGAAACCCTGATAGCCCATTTATCACGTCACATAGGCATGAAACGTTATAAATGTTATGGCTGTGATAAACATTTCTCCTGCATTAGTGCTCTAAAGACACATCGTGACATACGTGCCGATAGCTGTGGCAAAGTTAAATTTAATCCCCGTGCCATTGGTCCCCGTGTGCGAGTCATACGTGGCAATGTTATATTTGAGCCTCAGCCTGAAATAAATCCCTACTTAAAGTCTGAGGATCCCAAAAGTGTCTTGTCTGAATTACAAAATCAGGATCAGTCAACTCAAGAATCAACTTAG
Protein Sequence: MLAAVKIKEEPLDEIEDLQEIFKQEEALMKQQFNADLLGQNLPSNNFHIVEEEDSFITVSAADMKCQDELQFIDSINNSDPNKFRGVCSKCLKTFTNRSQFLKHTKRNHCITKQKCPVCPVTFIDSSSLLNHLNLHRDNSFFCTLHCGANFATLPLCEEHELKEHKVQAPPKIRYKHFCSFCREGFKTELQLHVHWLQQNQGCGKLMQDVVLHSTNVANNYNTNCKNIKNLSIEKQLQPVTKNSMSIIPITKLRLKSATPSPQTANKRQIMDQPNEETDTLNKRFKMLDKIKAEIETNQLSFNFDTDIQIKEEPLDEYETNMTNNLIPEVIIKTEEEGDKTEDEAVNEKPQMKSLILNNMIGAATSGKFIPLEKFVCSENSKTEQKPEMKTFSINSLVKANVNGKMINMNNQNIPVLKLINNNNNNINNNSPKTVVKNENFRFIKIMPAPMPTANSSKSLNNFNFANINNAGSGKLMTLKLANGQSLLNNTDIKPLPTSGLQIIKFLPNTQIISMKAANNNTTNFMGNKQPIILKLKNAPTLAVNKPTETKACTATPPNSSTSPTVSIKLNSLEENTTIDAEDFKKLQTEALIKAEEHRKNFYVPKTRLMIIENIPEKKQLIDSMKQKIADVETRTTEQIQGKPAGNFILKSKECDEPSSLYLPILTTLDVSLVEARYQNPNYCYKWICPYCLKDYEIKTALKLHLIRAHNLNSRDMEKINVQAKPFVCEEQLPLEDDIKSEIKEDIKPQIKIEPLSQDTDSQTLTNSETESLIIDTSSSSSPKRLKAINIKQPRPRYVCDKCGRTCSSKTMLNDHILANCSREPQYSCKECSKKFFSHGTLQCHMTIHTGELPHKCNYCDKRFRTRGQVKVHHRTHTGERPFFCQVCSQRFTHRETLIAHLSRHIGMKRYKCYGCDKHFSCISALKTHRDIRADSCGKVKFNPRAIGPRVRVIRGNVIFEPQPEINPYLKSEDPKSVLSELQNQDQSTQEST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259293;
90% Identity: iTF_00045651;
80% Identity: -