Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000007.1:2556534-2560843[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.02 0.99 10.2 3.3 1 23 239 262 239 262 0.96

2 14 0.0082 0.4 11.4 4.4 1 23 306 329 306 329 0.97

3 14 0.2 9.8 7.1 3.8 1 23 336 359 336 359 0.97

4 14 7.8e-06 0.00038 20.9 0.9 2 23 390 411 389 411 0.97

5 14 2 1e+02 3.9 2.3 1 23 488 511 488 511 0.95

6 14 0.26 13 6.7 1.6 2 23 519 540 518 540 0.97

7 14 0.0048 0.23 12.2 0.1 2 23 586 607 585 607 0.97

8 14 1 51 4.8 0.2 2 20 620 638 619 641 0.93

9 14 0.00067 0.033 14.9 0.6 3 23 722 743 720 743 0.96

10 14 0.00018 0.0088 16.7 0.5 1 22 750 771 750 771 0.95

11 14 0.28 14 6.6 0.3 2 21 783 802 782 806 0.89

12 14 0.061 3 8.7 0.9 1 23 814 836 814 836 0.95

13 14 0.06 3 8.7 0.2 2 19 863 880 862 882 0.93

14 14 0.0014 0.066 13.9 4.6 1 23 939 962 939 962 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.02	0.99	10.2	3.3	1	23	239	262	239	262	0.96
2	14	0.0082	0.4	11.4	4.4	1	23	306	329	306	329	0.97
3	14	0.2	9.8	7.1	3.8	1	23	336	359	336	359	0.97
4	14	7.8e-06	0.00038	20.9	0.9	2	23	390	411	389	411	0.97
5	14	2	1e+02	3.9	2.3	1	23	488	511	488	511	0.95
6	14	0.26	13	6.7	1.6	2	23	519	540	518	540	0.97
7	14	0.0048	0.23	12.2	0.1	2	23	586	607	585	607	0.97
8	14	1	51	4.8	0.2	2	20	620	638	619	641	0.93
9	14	0.00067	0.033	14.9	0.6	3	23	722	743	720	743	0.96
10	14	0.00018	0.0088	16.7	0.5	1	22	750	771	750	771	0.95
11	14	0.28	14	6.6	0.3	2	21	783	802	782	806	0.89
12	14	0.061	3	8.7	0.9	1	23	814	836	814	836	0.95
13	14	0.06	3	8.7	0.2	2	19	863	880	862	882	0.93
14	14	0.0014	0.066	13.9	4.6	1	23	939	962	939	962	0.98

Sequence Information

Coding Sequence: ATGAGCAATTATATTAATAATGAGTGTTTTATAAATGGAATTCAATATAAATGTCGTACATGCTTTGATCCAGGACAATCAGTTTACTCCCTTACAGCTGAATGCAGCAACTCAAAAACCTGGCGTGATTTATTAAAGGAAATTGCTCAGTTTCAGGCAATCGATGATGATCTACTACTCCCAAAGACTGTGTGCTGCAAATGTTTGGATAAACTTATAAGTTTCTATGATTTTATACTGCAGATACATAATGTGAATAAAAAATACTCTCAATTATTGGGAAGATGTAAGGATGGGATTTCAAATGAAATTGACAATTTTACTGATTGTTTGGCAGAGTCTGCTAATGCTTTGCCCTTGGAGATGTTAATGCCGGAAATTAAATTGGAAGAAGAACAGGTTGTTCCATACGATATTGTTTACAGTGACAATAATATAATGCAAAAATTGGAAATTACAGACGCTCATGACCCTTTTATGGAAACGTGTGATGAGGCTATAAATTCAATGTCAGTGCAATTGGAAGAAATCCAAAGATCACTAAATGAACAAAATAATCAAAGTTCAAACGATGAAGAAAATAAATTCAGCTCCTCATCGTCCGATGAAAGTGATTACTTGCCTAAAAACTATAATTCAAAAAGCCAACCGAGCGAAGAAACTACATTTGAGACAGATTCAGACTATGGGCTAATCAAGAAAGTGAACAATAATTTTCAATGTGTCGTATGTAAGACATCATTTAAGTTGCAAAAAAATTGTCGTCGGCATATAAAAGCCGCACACTCTAGCCAAAATGATGATAGCTCCTCCTCATCCAATGAAAGTGTTTATGATTATGATTTAGACTATAGACAAGAAATCTCACTAAAAAAAGGTTCAGAAGGTGAAAAAATCGAAAAAATCAACGATCATTTCGTATGTCTTATATGTAAAAAAACGTTTACGTTGCGAAAAAATTGTCGTCGGCATATTAATATAAAACACCCACAAGAAACCATATTATATCCTTGCGGATTTTGTGATCAATATTTTAACTGTAAGGACTACTTACAACTACATCTGAAACGTAAGCATACAGGCGAATCACTCGGTTCAAACGTTAAGCATATACAACGATTATTTGGAGATCGTCTATACAGCAAGCCTGCAGCTTGGAGTCTGGTCGAATGTAAATTGTGTGATACAACATTTACAACAAATAAAGAACTTCGTCAGCACTTGGAAACTCACAGGGATGTAAACACTCTTCATGGCTTAGATCTGGACAGTAACATTGTCCAACATTTATTTCCAGAAATGATTGATTTGGACGTTCTCAAGGAAAGTATATGCAATGATATTCGTGAGAAAGATTGGTTCAAATATTACACAGTGTTAAATGAAAATATGTATGAAATGTCTGTTAGTGATACAGAAGCAGAAGATTTGCTAGAAGACACAGCAGATCGTGTTGGCAAATACAAGTGTGAATTGTGTTTTGAAGATTTCTTGTATAAATACCAAGTTTTCACACATTTAAAAGAATTTCATAACAAAGAGGAAATCCCTTTGAAATGTAGACGATGCAAATTGGAATTTATTTCAATAAAAATGTACGAGGATCATAGAAAAACTCATTGCCGAAATAAAAATAAAGTTTTACTTTGTATAAATTGCCCGGCCAAGTTTGTTTGGCCGGAAAATTTGAAAAAACACAAGTGTGCCAGAAAAATACCACCGGAGAACTGGCCCACTATTACAAATAATCAAATAAAATGTAACATATGCGAAATGGAATTTGAGGAAAAGACAGAATATCAAGAGCATTTAGCGACACATAGTAATTGCGGGACCGCATCTGCAAAAGCGATAATACGTTGTGGTCTTTGTGCACAATATTTTCAAAAACTTGAAGATTTGCGTCAACACATGCCGTTGCATGCCGATGGCGTAACTGGTATTGACTTTAAAGCCTGTATATATGTAAAATACTTTGAACGTAGCAAATTAATTGATTTAGTGCCACTGCAGCTGAGGATTCAAAATGCCTATAATAAATCTCAAATTAGTTGTTTTTACCAAGCCATCGATAAGTACGGCAATGAACTAGACCTTTCAGACTCAGATAGTAACACAGAAGAGGATGCAGATGACGGTCAAAATGTAAGAAGACAATACGGGTGTGACATTTGCAAAGAAATGTTTGCAAAACGGAAACTTCTATTAAAGCATCAACGAGAACAGCACAATAATGTGCCACTTCCCTTTACGTGTAAGGACTGTAATCAGTCATATGTTAGTCTTGATTTATTGCAACAGCATTTGAAAAGGGTTTGTTGGAATGAACACCGGCGAATAGCTCAACAATGTGATTACTGTAAGGCTCGTTTTATATGGCCAAATAATCTATTGAAACACAAAGAAATACAGAATCACATGACAACCGATGTTCAACTTCATTACTGTCTCCTGTGCCCAAAAACATTCTTTAGTGTTGAAGATGTCAAAGAGCACTTAGGTCGACATTGTGTAACACCAGCTGATGTCAAGACCGTTGAAAGTATAGTAAATTCTACATGGTGGCCAAACGGTGACAAAACAATTAAATGTAAACTATGTGGCCTAACATTTGAAACTATGGCAAAATTAAGTGAACATTTTTCACCTACAAATCCACATACATCGTGCGCTAATTCGCATTCACTGGCGAATTACTCGATTACAAATCAAAAAGGATTCGAATTGCATTTAGAACTGGATTCTGAAACAGAATTAGAAGATGAGCAAGAAGCTGATGCACATAAAGAAGACGATATAAAGACGTTATATCCCTACACCTGTTGCATGTGCAGTAAGTCATTTATGCGAAAATATCAAATAGCTCAACATCAGCGATCTATGCATAATTATGAATTGTTACAGCTGAAGTGTGAACGTTGTATTTTTAGAACAGTCTCACAGGTAACGAAATACGAATATAACATGTTTACATGTTTTAATTAA
Protein Sequence: MSNYINNECFINGIQYKCRTCFDPGQSVYSLTAECSNSKTWRDLLKEIAQFQAIDDDLLLPKTVCCKCLDKLISFYDFILQIHNVNKKYSQLLGRCKDGISNEIDNFTDCLAESANALPLEMLMPEIKLEEEQVVPYDIVYSDNNIMQKLEITDAHDPFMETCDEAINSMSVQLEEIQRSLNEQNNQSSNDEENKFSSSSSDESDYLPKNYNSKSQPSEETTFETDSDYGLIKKVNNNFQCVVCKTSFKLQKNCRRHIKAAHSSQNDDSSSSSNESVYDYDLDYRQEISLKKGSEGEKIEKINDHFVCLICKKTFTLRKNCRRHINIKHPQETILYPCGFCDQYFNCKDYLQLHLKRKHTGESLGSNVKHIQRLFGDRLYSKPAAWSLVECKLCDTTFTTNKELRQHLETHRDVNTLHGLDLDSNIVQHLFPEMIDLDVLKESICNDIREKDWFKYYTVLNENMYEMSVSDTEAEDLLEDTADRVGKYKCELCFEDFLYKYQVFTHLKEFHNKEEIPLKCRRCKLEFISIKMYEDHRKTHCRNKNKVLLCINCPAKFVWPENLKKHKCARKIPPENWPTITNNQIKCNICEMEFEEKTEYQEHLATHSNCGTASAKAIIRCGLCAQYFQKLEDLRQHMPLHADGVTGIDFKACIYVKYFERSKLIDLVPLQLRIQNAYNKSQISCFYQAIDKYGNELDLSDSDSNTEEDADDGQNVRRQYGCDICKEMFAKRKLLLKHQREQHNNVPLPFTCKDCNQSYVSLDLLQQHLKRVCWNEHRRIAQQCDYCKARFIWPNNLLKHKEIQNHMTTDVQLHYCLLCPKTFFSVEDVKEHLGRHCVTPADVKTVESIVNSTWWPNGDKTIKCKLCGLTFETMAKLSEHFSPTNPHTSCANSHSLANYSITNQKGFELHLELDSETELEDEQEADAHKEDDIKTLYPYTCCMCSKSFMRKYQIAQHQRSMHNYELLQLKCERCIFRTVSQVTKYEYNMFTCFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260188;
90% Identity: iTF_00260188;
80% Identity: -