Cvom004996.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000107.1:669957-672372[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.7 1.3e+02 3.5 2.2 1 23 47 70 47 70 0.92 2 12 0.0015 0.075 13.7 3.3 1 23 168 191 168 191 0.95 3 12 0.0005 0.025 15.3 0.8 2 23 202 223 202 223 0.98 4 12 1.7 82 4.2 0.2 2 23 230 250 229 250 0.91 5 12 0.00039 0.019 15.6 0.1 1 23 256 278 256 278 0.97 6 12 0.0024 0.12 13.1 4.5 1 23 284 306 284 306 0.97 7 12 1.4 70 4.4 0.1 1 13 309 321 309 325 0.89 8 12 0.018 0.9 10.3 2.4 1 20 468 487 468 490 0.87 9 12 0.0023 0.12 13.2 3.4 1 23 500 522 500 522 0.98 10 12 0.0023 0.11 13.2 0.1 1 23 528 550 528 550 0.98 11 12 0.091 4.5 8.2 0.0 1 23 556 578 556 578 0.98 12 12 0.081 4 8.3 6.8 3 23 586 606 585 606 0.99
Sequence Information
- Coding Sequence
- atgtccgtggaaattgtacagaatttttcctatcctcctctaaagaaacgagcatgtgaaacaatatcattggccagtgatggagccgcctctaaatgcgccgaaatatttgttacaaacaatgccgataaatggacatttttctgtgcctattgtcaaaaggctacctgtgatataggcgcttttatttgtcacatcagattggaacacttgaatgttcagccagattcgagcagaagcaaacagacaactgaattggaaacaaacgcacttgcttatgatggtgaacagaccttccatagaaattccattaaagaagaagtagctatAGTCAGCCATCAAGAACATTTACAAACTAATTGCTCTGAAGTTTCAAAAATTGCATGtattgctttattagagcagcctcaaaaaagtaatgataccaatatagccggtggcagtaagccccataaaagaaaaaagaaaataacaggtgcagcagacagtgagtcattgcaccacaaatgcccgacttgcaatcgcggctttaaaactaaacaagaagctatacatcatatattatacaaccataacaaaaaCTATCACATTAAATTGCCCAGAAAATGTAGAGTGTGTCGCAGAGGTTTCAATACGGCAAATGGGTTAAAAGCCCACTTAAAATCACACGATGAAAAGAACCATTTGCAATGTCCGATATGTCCTTCGAAACTTAAAGAAAGCTATTTTATTACACATGTTTTGATGCACGAATGCGACACGTGCTTTCCTTGTCAGGTGTGTGGCAAAGTATATGACAGTAATGATGAACGCATGCAGCATTGGGAAACACACGCTAAAGACAAACCATTTGATTGTAAAATTTGCTTACGCCGCTATCGTAAACAACAATATCTGACGCATCATTTAAAAATCCACAATCAATATCAGTGTAATTTCTGTCCAGCTGAATTCGTTTCACCTCAAGCTCAACAAGCTCCCTATGTTTGTACGAGCTGTGAAAATGTTTCCGATATAAAGGAAAAAGCTGAACATATGAGATCATTGGCCTATAAAAATCATGTATTCGATTCAGATGAGGATACCCTTCCAACACATAACCCGACGGACGAAGTTGCTGCACAACATAATAAGACATCTATTGACAACAAACAAATCTTACAATTCTCCAATAACAACGATGCGACAAGGGATGAATCTTGCAATGACTCAACTACTCCTGGTTCTTTTTCTCTAAATGAGCAAATTGATAACGATAATGATGATGAATTGCTGTCAATTGAGGATGGCTCAGACTTGGAATTTTTGGATGAAACCTACGATATTGATAATAAAGATGGTGATGATGATTTGCCTAGTGGTAGCGGCCAACACATATTCCAGTCAGACGGAGACTCAACGCACATATGTTCCTATTGCGATAGAGTTTTTAAATCCAGACAGGCCTTAGCCCCCCATCTAAAATGTCATATTAATAATGATCATGCTGATTTTCCCTACAAATGTTCTTACTGCAATAGAGGCTTCCAATCTAAATCGGGCTTAAGCTTTCACTATAAAACTCACGACAAAAATAAATACTTCCGATGTCCCATATGTCCATTTAGTGGCTATCGAGAAGGAGATTTCATTAATCATGTTTTGACGCATGAAAACGAATCATGCTTTCCCTGTCAGGTCTGTGCAAAAATATTACCCAGCAATGCTGAAAGAGCGAAACATTGGAAAACTCACCTGAAGGAGAAACCGCATGGGTGCAAGTATTGTTATCGCCGTTTTACACTCAAACATATTCTACATCGTCACATGAAGACACACATAGAAAAAACCGAATAA
- Protein Sequence
- MSVEIVQNFSYPPLKKRACETISLASDGAASKCAEIFVTNNADKWTFFCAYCQKATCDIGAFICHIRLEHLNVQPDSSRSKQTTELETNALAYDGEQTFHRNSIKEEVAIVSHQEHLQTNCSEVSKIACIALLEQPQKSNDTNIAGGSKPHKRKKKITGAADSESLHHKCPTCNRGFKTKQEAIHHILYNHNKNYHIKLPRKCRVCRRGFNTANGLKAHLKSHDEKNHLQCPICPSKLKESYFITHVLMHECDTCFPCQVCGKVYDSNDERMQHWETHAKDKPFDCKICLRRYRKQQYLTHHLKIHNQYQCNFCPAEFVSPQAQQAPYVCTSCENVSDIKEKAEHMRSLAYKNHVFDSDEDTLPTHNPTDEVAAQHNKTSIDNKQILQFSNNNDATRDESCNDSTTPGSFSLNEQIDNDNDDELLSIEDGSDLEFLDETYDIDNKDGDDDLPSGSGQHIFQSDGDSTHICSYCDRVFKSRQALAPHLKCHINNDHADFPYKCSYCNRGFQSKSGLSFHYKTHDKNKYFRCPICPFSGYREGDFINHVLTHENESCFPCQVCAKILPSNAERAKHWKTHLKEKPHGCKYCYRRFTLKHILHRHMKTHIEKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -