Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000258.1:209478-212800[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.4 20 6.1 0.1 1 23 281 303 281 303 0.96

2 8 1.6e-06 8.1e-05 23.1 1.5 1 23 330 352 330 352 0.99

3 8 0.00044 0.021 15.4 0.2 3 23 360 380 358 380 0.92

4 8 0.0011 0.056 14.1 1.4 2 23 387 408 386 408 0.97

5 8 0.0018 0.086 13.5 0.5 1 23 414 436 414 436 0.95

6 8 6.4e-05 0.0032 18.1 2.6 1 23 442 464 442 464 0.99

7 8 0.0011 0.054 14.2 3.3 1 23 470 492 470 492 0.98

8 8 0.0013 0.066 13.9 0.1 1 23 498 520 498 520 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.4	20	6.1	0.1	1	23	281	303	281	303	0.96
2	8	1.6e-06	8.1e-05	23.1	1.5	1	23	330	352	330	352	0.99
3	8	0.00044	0.021	15.4	0.2	3	23	360	380	358	380	0.92
4	8	0.0011	0.056	14.1	1.4	2	23	387	408	386	408	0.97
5	8	0.0018	0.086	13.5	0.5	1	23	414	436	414	436	0.95
6	8	6.4e-05	0.0032	18.1	2.6	1	23	442	464	442	464	0.99
7	8	0.0011	0.054	14.2	3.3	1	23	470	492	470	492	0.98
8	8	0.0013	0.066	13.9	0.1	1	23	498	520	498	520	0.98

Sequence Information

Coding Sequence: ATGAATCCAAAAACGGTTAATTCCATGCGAAATCTGTGCAGAACGTGTATGACCCGATTTTCCAAAACACAAAGGGAAAGTGCCATTAATAATAAGCAGAGCATTCACGAAGTACCAACTGGATGCAAAGAAGATGCCAGCTTAATGGAACTACTTCAACTGGTACAGCCTCAAATAAAAGTGGAAATTAGTGATAATCTTCCTACGCTAATGTGTACAGATTGTATAAAGAAATTATTAATGACCCATGAATTTATAGAGATGTACAAAAATGTCGATAAACAATTCCGCAATATGTTAAAGCAAGTGGAATCCGCCAACAGTAGACGTAATGTAAAAGCGTCAAAGGAATCCATAGACATTATTGAGTTAAACGATCAAACCGAAGAGGCGATAGAAACAGAAGATGATATCTATGAATTAACCAAGTATGAAATAGAAGTTGAAGAAATAAATATTGAAGAGCTGGATAAAGAGGAAGTAAATGTAAGTGATTGGCCAGAATTTGATGATGAACCGTTGCATGACATATCAGAAGAAGCTGAAGATAAGGAATATTTCACGAATCCCTATAGTGATGAAGAATCGGAAGAAAAAGAGTTATATTTCACAAATCCTTATAGTGATGCCAGTGATAATGAATGGACACCTAATGAAAGTTGTCAAAAAGGCACCACTACAAAGTCCATTACGAAAAAACGAAAATCTGACAATGATATAAATGATGACACCACCATAGACATTCTTCCATCTAAGAAAAAACCTAAAAAAAAGGTTTCGAAGAGGAGAGATAAAATTGTGAAAAAAAATCAGTTGCCTGTAGAAAATAAAGACGGCAGTTTTCCATGTCAGGAGTGTGAAATAGTTTTGGATAATGAACAACTTCGACTAGAGCATATGCGATTCCATCGAATGGGAAAAATGTGTAAAAGAAAGTACACGAAGAAATCAGACAAACCATCAACAAATCAAATCGACCATATGGGCTACGAATGTAATCTTTGTAGCAAAGTATTTTCGAAAAACACATCCTATAAGATTCATATGCGCGTACATACAGGTGAGGCACCGTACCTGTGCATTGAGTGTGGAAAAGGTTTTAAAGTTCTGGGCAGTTTGAATACACACATGTTACGACACAAAGGCGAGAAAAATGTTCAATGTCCACATTGTCCAAAGAAGTTTGTGTGCTCAAGTGGTTTATATGGTCATATGATGGTACATACGAAAGAGAAGCCATTTGTGTGTGATATTTGTGGGGCTGCCTTTCATATGGCTTATATGTTGAGAAAACATAATCTTTATCATAACGGTATTAAAAACTATCCATGTGAATATTGTGATATGAGATTTGTTACTGCTGAAAAATGTcgtcgacatatgcgcacccacacgggagaaaaaccctatcgttgcaaatattgcgagagagcttttgctcaaagtaatgattgtattaagcatttgcgacaacatctaggcgataacgtctatcagtgtgaactatgcccgctaagatttccattggccagagatttgcgagtacatttcgccactcataaagatgacgatgaagaaactcgtgctcgttatttacaggctcggttagaagaagagCAAAACTTGCGAGATAAATTGGGAGTTAAGGAAACTTGA
Protein Sequence: MNPKTVNSMRNLCRTCMTRFSKTQRESAINNKQSIHEVPTGCKEDASLMELLQLVQPQIKVEISDNLPTLMCTDCIKKLLMTHEFIEMYKNVDKQFRNMLKQVESANSRRNVKASKESIDIIELNDQTEEAIETEDDIYELTKYEIEVEEINIEELDKEEVNVSDWPEFDDEPLHDISEEAEDKEYFTNPYSDEESEEKELYFTNPYSDASDNEWTPNESCQKGTTTKSITKKRKSDNDINDDTTIDILPSKKKPKKKVSKRRDKIVKKNQLPVENKDGSFPCQECEIVLDNEQLRLEHMRFHRMGKMCKRKYTKKSDKPSTNQIDHMGYECNLCSKVFSKNTSYKIHMRVHTGEAPYLCIECGKGFKVLGSLNTHMLRHKGEKNVQCPHCPKKFVCSSGLYGHMMVHTKEKPFVCDICGAAFHMAYMLRKHNLYHNGIKNYPCEYCDMRFVTAEKCRRHMRTHTGEKPYRCKYCERAFAQSNDCIKHLRQHLGDNVYQCELCPLRFPLARDLRVHFATHKDDDEETRARYLQARLEEEQNLRDKLGVKET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200172; iTF_00045622; iTF_00200154; iTF_00259261;
90% Identity: iTF_00259261;
80% Identity: -