Cvom011677.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000307.1:929703-934609[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00055 0.027 15.1 2.8 2 20 574 592 574 594 0.94 2 9 2.7 1.3e+02 3.5 3.6 1 20 603 622 603 626 0.82 3 9 0.00051 0.025 15.2 5.3 1 23 631 653 631 653 0.98 4 9 7.7e-06 0.00038 21.0 0.1 1 23 664 686 664 686 0.97 5 9 2.2e-05 0.0011 19.5 4.7 1 23 691 713 691 713 0.98 6 9 4.1e-05 0.002 18.7 2.7 2 23 720 741 719 741 0.96 7 9 0.002 0.096 13.4 0.7 2 23 747 768 746 768 0.97 8 9 0.23 11 6.9 0.7 1 23 809 832 809 832 0.90 9 9 0.0002 0.0098 16.5 2.1 2 23 839 861 838 861 0.95
Sequence Information
- Coding Sequence
- atgcctagctgttgtctttgtaaaaagaaaatgcaacgtgaaaacgggaccttcttcggtgttccaaaagacgagagaagaagaaaaaagtggagtgagatttgtcggttgcagttcgcaaagaacgcccgtatatgtgaagatcacttcctgccaaccgatatcataagatcgtcaaaacagttccttttgctgcccaatgcagtgccTTTTGTTCAGACAAAGCAAACTCAAACTGCAAAAAAAAAAGTGTTTTGTGCACTAGGCTGCCCATCCGATAAACAACTTTATAAATTTCCAAGCAGAATAAATGATGGAGAAAGAAGAAAGTTATGGTTAAACTTTTTTGATATGGAGGATCCTAATATTGAGGATATCTTTGCCTGTGAAAGACACTTTTCCCATATGCAATCCACTGAGAAAGGTATTCGAATGGATGCAGTTCCAGATGTACCCATAATATACAATACCATAATACAGCCATTTAGTAAAAACCCTAACAAATTGATAAAAAAGGGCTTTGTAACAACATCTGGCATACCAGAAGATATAATTTATAGCAAGAAAGATGGAATATTTACACAAAATGTTTACAACATAAATAACAATGTTCAGTCAGCTCTATTCCAAGGGAACCCTGTTTTAGAAATCCCTCTTATTAAAACGGATTCAAGGACAGCATCCACGCAAACTAATACTCGTCTCTGCGGCACAATACAAGTTTCAGAGTTTGCAGATCAATATCGGATTAATTGTTTCTATTGTTGTAAAGCATTTTCAATGGAAAAATGGAAAATATTCAGAAATCATCTGCAGAAAAAGCACTTTGCAAATGAAGAAGCCTTTAAAATATCCAAATATGTTTCTATTGATCACGATTATACTCCCATACGTTTACCATCGTCCTCTCCAATTGATGTCGATCCTATTATACATACTCCATCACCTGAAACTATTGTTATTAATGCTAACTCACTATTACCATACGTAGTCAAACCACTAGAATCTACATATGATCCACCTGAAGCTGATGTTTTAAATCCGAATTTCTATTATACACCAGAGGAGACCATTATGATTACTGACAACCCAGAGAGCTTTTCGTTTAAAGTTCCAACTACATTGAACGATTCAACCAACAGAGTCAATAATGGAGCCAAGAGTTCCCCCTTTCCATACTCTTCTAAAAATGAAAAGAACAAACCGATTAAAAAGAGGACTATTAGGAAATCTTCTAAAAATGTTATAGGAAATACAGGGAAAAAGCATACATCAAATAAAACAGCTTTAAGTCGCTGCCTTAAGAGATCTGATACAATTGACACAATAGAGCCAGTAGAAGTTAGGGACGAAGGTGAACCCGATACTACTAAAAATTTTCAACAGGAGACCACAGAGCTTTCATTCGAATATACACCTCATGATATAATAGATTTTCTGTTGGAGAGCATGAAGAATTACCCGGTCTTGTGGGAATTTGATAACGAACCGTTCAACGAAGACTATTATGAAGCAATCGAAGAGCTGTGCAAATTAATCAACGAAAAATGGTCTTTGAATATAGACACTTTAAAAATGCGACGCAGCGTAAATCGTATTCTGAAATTCTATTGTTCTGTGTACCCATGTGAAAATGTTGAAAATGTTAACCAATTTGCTAACTATTACGATAAATGTGCTGCTTTTCTGCCTAAATCTGTATATGATATTGCCTATGCTCGCTGTTCTCATTGTTATAGATGCTTCAAAAATGAAAGCGAATTAAAAGCTCACCTGTTGGAAGAATACAAGTATTTGCAATGGCCTCACAAGTGCGTACAGTGCAAGGAATGTTTTAGGGAGAGTGATGAATATGAGTTCCACAAACTTCTGCCGCACTTTGAAGAAGTATTTAGATGTGAACTATGCAACAAGAGCTTTGTTCATCGCAATAAATTCAACAAACATGTATCTAGACACCAAATAAAGCAAAGTGATGAACCCGGAAAATACGTGTGCAATATTTGCGGCAAAGTATTTAAAATTAGTAGTGAATTGCGGGGTCATTTGATATATCATGGAGAGAAAAAACACAAGTGTCATCTGTGTCCAAAATCGTATTATACGAATGCGACACTAAGGCGCCACATAATGAGTCATAATAAAGAATATGAATTAATGTGTGAAGTGTGTGGCAAGGGCTTTATCCATCATACTAACCTTAGAGAACACATGACCAAACACACTGGAGCTAAAGTCACTTGTAACATATGTAATTTGCAATTAAGAAAATCAAGCCTAATGCGTCACTTGCGAACTGTCCATGTGGCATGTGAAGGCACCATCGAAACAACATTCAGAGCCAAAAATCATCACTACAAAAGATTATTATTACGTCCCAATCGACGACGTAGTTATCGCAAAAGATATAAGAAAGAGAAAAATTACATTTGTAAAATCTGTAACATACGTTTTGAAGGTTACAAATTCCTTGTAGAACACAACAAAGAGTTTCATGCCGATGCACCGAAATGGCCGTGTAAAATATGCAATACGGTATTTAGACATAAAATAAATATAAGGCGTCATTATCGAGAAAAGCACAATTTACATGTCTATCAGGCTTTTAAATTAGTCGATCAAAATGAAGATCTAGATACAGTGTTAGCAATCCAACCAGAAGAGTTAGAAAAATTATGCGAAACTTTAGCATATTCATTAAATGGACCAAGCAGTGTAAAAACTCCTATTCATACAGAAATAGTCAAATCAGATCCAGCAGCAGAAGAGATTTATATTGACGAAGAACGATTGCACAGTGACACAATACAAGATGAAATAATGAAAGTAGCTGATCATGATACGAGTACACACGAAATTAAAGTCGATGATGATCATTATATGAATGATTTTTTTACAAATCTTTTAAAATAA
- Protein Sequence
- MPSCCLCKKKMQRENGTFFGVPKDERRRKKWSEICRLQFAKNARICEDHFLPTDIIRSSKQFLLLPNAVPFVQTKQTQTAKKKVFCALGCPSDKQLYKFPSRINDGERRKLWLNFFDMEDPNIEDIFACERHFSHMQSTEKGIRMDAVPDVPIIYNTIIQPFSKNPNKLIKKGFVTTSGIPEDIIYSKKDGIFTQNVYNINNNVQSALFQGNPVLEIPLIKTDSRTASTQTNTRLCGTIQVSEFADQYRINCFYCCKAFSMEKWKIFRNHLQKKHFANEEAFKISKYVSIDHDYTPIRLPSSSPIDVDPIIHTPSPETIVINANSLLPYVVKPLESTYDPPEADVLNPNFYYTPEETIMITDNPESFSFKVPTTLNDSTNRVNNGAKSSPFPYSSKNEKNKPIKKRTIRKSSKNVIGNTGKKHTSNKTALSRCLKRSDTIDTIEPVEVRDEGEPDTTKNFQQETTELSFEYTPHDIIDFLLESMKNYPVLWEFDNEPFNEDYYEAIEELCKLINEKWSLNIDTLKMRRSVNRILKFYCSVYPCENVENVNQFANYYDKCAAFLPKSVYDIAYARCSHCYRCFKNESELKAHLLEEYKYLQWPHKCVQCKECFRESDEYEFHKLLPHFEEVFRCELCNKSFVHRNKFNKHVSRHQIKQSDEPGKYVCNICGKVFKISSELRGHLIYHGEKKHKCHLCPKSYYTNATLRRHIMSHNKEYELMCEVCGKGFIHHTNLREHMTKHTGAKVTCNICNLQLRKSSLMRHLRTVHVACEGTIETTFRAKNHHYKRLLLRPNRRRSYRKRYKKEKNYICKICNIRFEGYKFLVEHNKEFHADAPKWPCKICNTVFRHKINIRRHYREKHNLHVYQAFKLVDQNEDLDTVLAIQPEELEKLCETLAYSLNGPSSVKTPIHTEIVKSDPAAEEIYIDEERLHSDTIQDEIMKVADHDTSTHEIKVDDDHYMNDFFTNLLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259328;
- 90% Identity
- iTF_00259807;
- 80% Identity
- iTF_00259807;