Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020001659.1:858598-864015[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00018 0.0086 16.7 0.3 2 23 581 603 580 603 0.96

2 8 0.034 1.7 9.5 10.2 2 23 611 633 610 633 0.96

3 8 0.0001 0.005 17.5 3.7 1 23 651 674 651 674 0.96

4 8 3.3e-06 0.00016 22.1 0.6 3 23 702 722 701 722 0.99

5 8 0.048 2.3 9.0 0.7 1 23 728 750 728 750 0.97

6 8 1.2e-08 6.1e-07 29.8 1.2 1 23 756 778 756 778 0.99

7 8 1.7e-05 0.00085 19.9 7.3 1 23 784 806 784 806 0.98

8 8 0.019 0.95 10.3 0.2 1 22 812 833 812 836 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00018	0.0086	16.7	0.3	2	23	581	603	580	603	0.96
2	8	0.034	1.7	9.5	10.2	2	23	611	633	610	633	0.96
3	8	0.0001	0.005	17.5	3.7	1	23	651	674	651	674	0.96
4	8	3.3e-06	0.00016	22.1	0.6	3	23	702	722	701	722	0.99
5	8	0.048	2.3	9.0	0.7	1	23	728	750	728	750	0.97
6	8	1.2e-08	6.1e-07	29.8	1.2	1	23	756	778	756	778	0.99
7	8	1.7e-05	0.00085	19.9	7.3	1	23	784	806	784	806	0.98
8	8	0.019	0.95	10.3	0.2	1	22	812	833	812	836	0.90

Sequence Information

Coding Sequence: ATGAAAGAAACAACATTTTCATTAAACATTGAATGTCGTACATGTTTTAATGCTAGCAAAGATTTGCGTCCTCTTACAACAAAGATGAGTTATTATAAGAAACGATTAAAATCGTATGGTGAACTTTTAGAGGAAGTCACAAAAATTAATATTAAAGATGATAAACACCCAGAATTTCCACAATTTATTTGCGATAAATGTTTACGTTGTCTAAAATCAGCACATAAATTTATAAAGCAAGCGGAAGAAGTCAATGAAAAACTCTACTCCATGCTAAATGAAAAATTGGATTGCTTGCAGGAAACACAAATCGATGTGGAACATGATATAGAAATTAAAATTGAAAGCAATGAGCAAGAACCAGAAGAAAAATCAGACTGCCTGCACGAAACACAAATCGATCTAGAAACAGTTCTAGACATAAAAGTTGAAAATAATGATGCAGAATCGACGATAGCATATTTGGATCGTTTACAGGAAACCCAAATGCATATAGAATCTACAAGAGAATTTAAAGATGAACACAATGGACTAGGACAACAACTGACAAAGGAGAGTTTTGTGAATGATACTGAAGCCCTAGACAAAAATTTTGATTTGGAAAGTAAAACTTTGGAAGAAACAAAACAAAAGGAGTCATACAATGATAACTATTACTCTGAATCTTTGCAATCACATGACTCAGATTCAGACTGGAAAGAAAGTGTCAACCAATCGAACAGACAATTTATAAAACAGAAATCGAATCAAGAAAATAATGTGAAAATAACAGAAGGAAATGAAGAAAATATTGATAATGCAATATCATATAATACTGATCTGGAAAGTCAAACATTTGGAGAAAAAAATCAAGGAGAAAAAATCAAGATCGATAAAGATAATGATTATGAATATGTATCTTTGCAATCAAATGATTCAGACTGGGAAGAAGACAATGAATGTCGCACCTGTTTTAAAGCTGCTAAAGGTCGGAATCCTCTCACAGCAAAGACGAGGGATTTTAGGAAACGATTAAAAACCTATGGCGAAATGTTAGAGGAAATTACTCAAATTAATACTAAGGATAATAAATACAAAGAATTGCCACAACTTATTTGCGGTAACTGTTCACGTCGCCTAAAATCAGCCCATTCATTTATACAACAAGCTGCGGAAGTCAATGAAAAACTCCATGCTATGCTAAATGAAAATTTGGAATGTTTACAGGAAATGCAGATAGATATAGAAGTTTGCAGAGACATAAAATTAGAAAACAATGAGCAAAACCCAAAAACCCAAAATTTGGAATGCCTGCAGGAAACACCAATCGATATAGAACCTTGTATAGAAATTAAAGTTGAAAACGATGGACAAGAAATAGTTAAGGAAAATTTGGATTGCCTGCTGGAAACACAAACTGATGTAGAAGCTGGAAAAGAAATTAAGATTGAAAACAATGGACTAGAAGGGAATCAGTATACAATGAATTTTGTAAAGGACAGTGTTATAAAAAATACAACGattttagaaaaGAACAAAGATGATAGAAGTACACCAGATAGAGAACTTAGAAAATTCGGGATAATAAACCAATACGAGTCAAATAGTGATGAAGATGACTCTGAATCTATGCAATCAGATGACTCGGACTGGAAAGATAGTGATAAACCAACCAATAGAAAACTGTTGAAAAATACACTACCATTAACAAGCACAGCGAAAACTTCAACAAAAACTAGTGACAACTTGGATATTGCAGTACCGTGCACTAAATGCAATAAAATATTTAAAAATGGCAAATTATTGGCTGTACATCAAAGAATAAGTCATATTCCGGAAGAGAAAAAATGCACTTGCCATTTGTGCGGCAATAAATTTACACGCTATTGCAATATGTATAAACATATGCGTAGTTTTCATGGCCCAGAGACGGTAACATTAATAAGCAAACGACCGGAAGAGGATTACATATACAAGTGTGATAAGTGCCCGAAAAAATATTCCCGAAAAAAGAGTTTAATTTATCACACAAAATTAAAGCACTCAACAGTCGAAATTATAGAAATAAATGAAAACAAAACGAATAATCGTGAGGAAAGAAAATTGGTAGATAAGGGTTCACTGTGTCCCATATGCGGCAGTTcgtttaccagcaaaactcaactaacggtgcatttaagacgtcacacgggcgaaagacctttcaaatgtgatttatgtgatcgagctttcttacttgtaacacaactcaacagtcacaaacgcctgcataccggagaaaaaccctataaatgcaagatgtgtggcaaagcttttcgcgtatcagacgatttacgtcaacacatgcgtacgcataccaatgtgagaccgcataagtgttcgcagtgcggacgttgttttaagcatccacaggatttgaaaattcatttacgttcgcatacgggtgaacgaccgtacatttgtggtgtgtgtggggatagttttcaacgttataacacattgagagcacatcgtattagaatggatcaTGTGGAGAATTTAGAACATAAAGATAATAAATTAGAATAA
Protein Sequence: MKETTFSLNIECRTCFNASKDLRPLTTKMSYYKKRLKSYGELLEEVTKINIKDDKHPEFPQFICDKCLRCLKSAHKFIKQAEEVNEKLYSMLNEKLDCLQETQIDVEHDIEIKIESNEQEPEEKSDCLHETQIDLETVLDIKVENNDAESTIAYLDRLQETQMHIESTREFKDEHNGLGQQLTKESFVNDTEALDKNFDLESKTLEETKQKESYNDNYYSESLQSHDSDSDWKESVNQSNRQFIKQKSNQENNVKITEGNEENIDNAISYNTDLESQTFGEKNQGEKIKIDKDNDYEYVSLQSNDSDWEEDNECRTCFKAAKGRNPLTAKTRDFRKRLKTYGEMLEEITQINTKDNKYKELPQLICGNCSRRLKSAHSFIQQAAEVNEKLHAMLNENLECLQEMQIDIEVCRDIKLENNEQNPKTQNLECLQETPIDIEPCIEIKVENDGQEIVKENLDCLLETQTDVEAGKEIKIENNGLEGNQYTMNFVKDSVIKNTTILEKNKDDRSTPDRELRKFGIINQYESNSDEDDSESMQSDDSDWKDSDKPTNRKLLKNTLPLTSTAKTSTKTSDNLDIAVPCTKCNKIFKNGKLLAVHQRISHIPEEKKCTCHLCGNKFTRYCNMYKHMRSFHGPETVTLISKRPEEDYIYKCDKCPKKYSRKKSLIYHTKLKHSTVEIIEINENKTNNREERKLVDKGSLCPICGSSFTSKTQLTVHLRRHTGERPFKCDLCDRAFLLVTQLNSHKRLHTGEKPYKCKMCGKAFRVSDDLRQHMRTHTNVRPHKCSQCGRCFKHPQDLKIHLRSHTGERPYICGVCGDSFQRYNTLRAHRIRMDHVENLEHKDNKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -