Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000438.1:260538-262298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.044 2.1 9.2 1.3 2 23 247 269 246 269 0.95

2 10 0.44 21 6.0 1.0 6 23 278 295 278 295 0.99

3 10 0.00032 0.016 15.9 0.4 1 23 301 323 301 323 0.98

4 10 0.028 1.4 9.8 3.3 1 23 330 352 330 352 0.97

5 10 0.23 11 6.9 0.6 1 12 360 371 360 383 0.86

6 10 1.1e-05 0.00055 20.4 3.4 3 23 391 411 390 411 0.96

7 10 6.8e-05 0.0033 18.0 0.6 2 23 420 442 420 442 0.97

8 10 0.83 41 5.1 0.5 3 19 452 468 450 473 0.52

9 10 6.9e-05 0.0034 18.0 2.2 1 23 479 501 479 501 0.96

10 10 7.9e-06 0.00039 20.9 2.8 1 23 507 530 507 530 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.044	2.1	9.2	1.3	2	23	247	269	246	269	0.95
2	10	0.44	21	6.0	1.0	6	23	278	295	278	295	0.99
3	10	0.00032	0.016	15.9	0.4	1	23	301	323	301	323	0.98
4	10	0.028	1.4	9.8	3.3	1	23	330	352	330	352	0.97
5	10	0.23	11	6.9	0.6	1	12	360	371	360	383	0.86
6	10	1.1e-05	0.00055	20.4	3.4	3	23	391	411	390	411	0.96
7	10	6.8e-05	0.0033	18.0	0.6	2	23	420	442	420	442	0.97
8	10	0.83	41	5.1	0.5	3	19	452	468	450	473	0.52
9	10	6.9e-05	0.0034	18.0	2.2	1	23	479	501	479	501	0.96
10	10	7.9e-06	0.00039	20.9	2.8	1	23	507	530	507	530	0.97

Sequence Information

Coding Sequence: ATGGACAATTGCGTAATTTGTTTGGAATCTAATGACGACGTCTTTTCCCGTATAACCACACAATCCAGTGAATGGGTTGAAGGAAAAATACAACGAATAATTGAAAAACATTTATGGTGGTGGTATATAAAGCCAGCATCTGCGAATAATGATCAAGTTCGATGGATTTGTCGTCAGTGTTGGCAAGAAATATCAACATTTCATAGCTTTTACTGTAAAGTAGAAATGGTGCACAGACAATATCAACCTATTCTGGCCTCTTTGGAGCAATCAAATTGTGCAGAGGAACTAGGGGCTACTATTAAGAACGAGATTGGAAATACAGTTGAATTGGAGCTGCTGAAAGAGCAACGTATGTTTAGGCCTGGGAAATTAAAGAAAACTATAGAAAATATTGAACAAAAAGATGTTTGCATGATGGAGATGAAAAGTGAATTTTGTTTTGATATAAATGAAGGTAACGACAAGCAGAAAGATGATGTTAATGAACTAGTTGATGCATTAGATTTACAAGACTTTGAAGGTGATAAAGATGACTGGTTGGAATTAGAGAGTGATGAAGACAAGCCGCTTATAAACAAAGTTAGAAAAGTAAAATGCCAGAAGACGAAACGAAAAACAAAATTTGAATGTGCAGATAAAAAATTAAGACCAAATAAGCCTGCGAACAGAAAAGATACCACGATTTGTAAAGAAGATCAGTTTGATAAGTTTTTTAAAGACAGTGAACATAAACTGGAATGTTGTATTTGTAATGTAACACTGACAGAtttccgtgctcttaaaatgcactatcgtaatgaacacaaaacccagggctatgccatgtgttgcgacaagaagtattttaaacgttgtttgcttgtcgatcatctaagagtacatacagatcccaatttctttaaatgtgaatcatgtgcgaaaacatttgccacacgacgtggcttggaaatgcatttggagtcacataaatcacgtgacagaaaatataactgtgatgaatgtggtaaatcatatttcaaactacacatattcgaacgacacaaattaacgcatgtaccggagagcgaaagaaatttcaattgtacacaatgcgacaaaaaatTTGCTTCCGATTACATACGGCGACagcatgaagactcaacgcatgccaagaaatatgccaaaatttgcgatatatgtggaaaatcattttgccatagttattcatttttacgtcatatggaagagcacgctggagcgccaccctctttagaaacctgtgaaatatgcggcgttaaattaacaaacaaatatggcctaagacaacacatgaaaatgcgccacctggaagaaaatcttcaggagcagatatgtccctattgttcaagagtttccccaaacctcaatgctcatcgtatgcacataaagtacacgcacactatgcagcgtaaacatgcttgtcatttgtgtgaaaaggcctttCGGCGTCCTCTAGaattaaaagaacacttgagtactcacaccggtgaggcgttatacacttgtcctcattgtccccgtacttttatatcaaatgccaatatgcataaacatagaaaaattgcccatcgtcaagaatgggaagaTACTCGTTTAAAGAAGTTGAATGAAAGGGGCAGAAAGACGGTGACAATTTCAGAGGCCATTGGTAAAAATATATTAAATATACAGAATAGTCCAGAAAATTTAATGATTATATCAACAGAGACTGTTATGGAAACAAATGTGTTAAATTTTTGA
Protein Sequence: MDNCVICLESNDDVFSRITTQSSEWVEGKIQRIIEKHLWWWYIKPASANNDQVRWICRQCWQEISTFHSFYCKVEMVHRQYQPILASLEQSNCAEELGATIKNEIGNTVELELLKEQRMFRPGKLKKTIENIEQKDVCMMEMKSEFCFDINEGNDKQKDDVNELVDALDLQDFEGDKDDWLELESDEDKPLINKVRKVKCQKTKRKTKFECADKKLRPNKPANRKDTTICKEDQFDKFFKDSEHKLECCICNVTLTDFRALKMHYRNEHKTQGYAMCCDKKYFKRCLLVDHLRVHTDPNFFKCESCAKTFATRRGLEMHLESHKSRDRKYNCDECGKSYFKLHIFERHKLTHVPESERNFNCTQCDKKFASDYIRRQHEDSTHAKKYAKICDICGKSFCHSYSFLRHMEEHAGAPPSLETCEICGVKLTNKYGLRQHMKMRHLEENLQEQICPYCSRVSPNLNAHRMHIKYTHTMQRKHACHLCEKAFRRPLELKEHLSTHTGEALYTCPHCPRTFISNANMHKHRKIAHRQEWEDTRLKKLNERGRKTVTISEAIGKNILNIQNSPENLMIISTETVMETNVLNF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259227; iTF_00045615; iTF_00200220;
90% Identity: iTF_00045615;
80% Identity: -