Basic Information

Insect: Calliphora vomitoria
Gene Symbol: Sry-delta
Assembly: GCA_942486075.2
Location: CALNXM020000173.1:631288-632565[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00054 0.026 15.2 0.4 2 23 190 212 189 212 0.93

2 7 8e-05 0.0039 17.8 0.2 1 23 217 239 217 239 0.98

3 7 3.9e-06 0.00019 21.9 0.9 2 23 246 267 246 267 0.97

4 7 0.00074 0.036 14.7 1.2 1 23 273 295 273 295 0.98

5 7 0.00023 0.011 16.3 1.9 2 23 303 324 302 324 0.96

6 7 0.00022 0.011 16.4 7.4 1 23 331 353 331 353 0.98

7 7 0.017 0.81 10.5 0.6 2 23 398 420 398 420 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00054	0.026	15.2	0.4	2	23	190	212	189	212	0.93
2	7	8e-05	0.0039	17.8	0.2	1	23	217	239	217	239	0.98
3	7	3.9e-06	0.00019	21.9	0.9	2	23	246	267	246	267	0.97
4	7	0.00074	0.036	14.7	1.2	1	23	273	295	273	295	0.98
5	7	0.00023	0.011	16.3	1.9	2	23	303	324	302	324	0.96
6	7	0.00022	0.011	16.4	7.4	1	23	331	353	331	353	0.98
7	7	0.017	0.81	10.5	0.6	2	23	398	420	398	420	0.93

Sequence Information

Coding Sequence: ATGGAAACTGTCAGTTTATGCTTTTTGTGCGGAAATGATACCGTTAAGCAAAACCTTGAGTTTTATAACATACAATCTTCGGTTGTGCCAGCATCACAGAAGCCCGTTCACGTTGTCCTCCAGCACCTGGCAAACTGCATTAAATATAAGCTAATTTTTCAAAGTGAAACCTATATTTGTGCAGATTGTTTTAAGGAGATGTCTGATTATGACGATTTGATGTTAAATCTTCTTTCCTCGCAAAAACGTCTTACTGTACTATTGCAAAATGCATTGATGGAAAAACCAGAAGAAGAAACCTCTACAATAGAGGAAGTAAACGAGCAGGGAATGGACATTGAACTTGAATTTGAAGACGACGAAGATGATCCGAGTCTTGTAGATGCGTTCAATCCAAATCTTGACACAAAAGAAGAATTAATTGAAATCGACGATGACGTTATTATTGAAGAAGAAACTGTAAATGATCACACAGAACACCCTGCTACAGACAGTACTAAAGGCGCCAGTAGTAACATATCCCCAGAGAGTCACAATACAAAAACTGAACGCAAACGGCATAGCCTAGAATGTGTTATTTGCGGAGTAGTTCTAAAATCGAAATATCTTTTGCAAAATCATATGAGCGAATGTCATAATGTTAAGCAATTTACTTGTAAAATATGCGGAGTATCAAGAAAAGATGAAGAATATCTTGAATTGCATATGAACATACACGAAGGTAAAACAGAAAATGAATGCCGCTACTGTCCCAAGCGATTTACGCGCCCTGTAAATACTTTAAGACACATGCGTATACACTGGGATAAAAAGAAGTTCCAATGTGAAAAATGTGGCGAACGATTTTCCCTTGACAACATGTTGTACAATCATCGTTTGAGGCACGAAGCTGAAGAAAATCCACTCATTTGCGCTATCTGTAATCAATCATTCAAATCACGAAAAACATACACTCACCATCTGCTCATACATCAGGAAAATCGTCCGCGACATTATTGTCACTTGTGTTCGAAGTCGTTCACTGAACGCTACACGCTTAAAATGCATCTTAAGACGCATTGGGGTGATAAATCATCCGGAAGTCCTACAAGTACAATTGGTAGTAGCAAAAATTCACCAGAGGCAAAAGAAACTGAGACCGAGGAGACTATTGGAATATTGGTGGAAAATGATAATTACGATAGCGATAATACTTGTGTCATATGCAATAAGAAGTATGATGCAAAGAATGGTCTCGAACATCATTTGCAGGATGTACACGATGTAATCCTTAAATAA
Protein Sequence: METVSLCFLCGNDTVKQNLEFYNIQSSVVPASQKPVHVVLQHLANCIKYKLIFQSETYICADCFKEMSDYDDLMLNLLSSQKRLTVLLQNALMEKPEEETSTIEEVNEQGMDIELEFEDDEDDPSLVDAFNPNLDTKEELIEIDDDVIIEEETVNDHTEHPATDSTKGASSNISPESHNTKTERKRHSLECVICGVVLKSKYLLQNHMSECHNVKQFTCKICGVSRKDEEYLELHMNIHEGKTENECRYCPKRFTRPVNTLRHMRIHWDKKKFQCEKCGERFSLDNMLYNHRLRHEAEENPLICAICNQSFKSRKTYTHHLLIHQENRPRHYCHLCSKSFTERYTLKMHLKTHWGDKSSGSPTSTIGSSKNSPEAKETETEETIGILVENDNYDSDNTCVICNKKYDAKNGLEHHLQDVHDVILK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00259226;
90% Identity: iTF_00200191;
80% Identity: -