Cvom008694.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- grau
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000197.1:1-8278[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.5 4.2e+02 2.0 0.2 3 23 104 125 104 125 0.95 2 9 2.5e-05 0.0012 19.4 1.3 1 23 158 181 158 181 0.94 3 9 6.1e-05 0.003 18.1 0.5 1 23 189 211 189 211 0.97 4 9 0.0013 0.064 14.0 0.4 1 23 219 244 219 244 0.96 5 9 0.0058 0.28 11.9 0.2 3 23 251 271 250 271 0.97 6 9 0.23 11 6.9 0.1 2 23 280 303 279 303 0.92 7 9 1.3e-05 0.00066 20.2 3.5 1 23 310 333 310 333 0.97 8 9 4.1e-05 0.002 18.7 1.8 1 23 338 360 338 360 0.97 9 9 0.00016 0.0079 16.8 4.3 1 23 366 389 366 389 0.98
Sequence Information
- Coding Sequence
- CCATTGGAAGAAAATTACCTTAAGGATGTCGAATTCAACGACGAATCCACATTGGATGATGATGATTGTAGAACTTCTGATGACTATGAACCTTCTGTTTCAAGCGAACAGGAATTTTCAATGGATGAAGAAACGGTGAATGATAAAGACGATGAGCTTCAGAATGATACCATCATAAAACATAACACTAGATCTAAACGACATAAAAATTTGGAAAAGGAAAAAGCTATTACAAAGAAAAAAAGGATTGTTCAACGTTTAGATCCCATACATACGGAAGAAATGATTAAGAAACATATACCTATGGGTTGTAATTTATGTGTTTTCGTGGGTACAACTTTTTCGGATATTGTGCAACATTTTAGAAGTGTCCATCCAAAAGTTAGACCGTATATAATGTGTTGTGATAAAAAGTTGTCGAAACGTTTTTTTGTGGCTCAGCATGCTTTAAAACACGAAGATCCGAATTGTTTCCGGTGCGATGACTGCAGTAAGTCGTTTACCACAATTAGTGGCCTACGAACCCACAACTTAAGTTACCATGCCCGCAATGAGGACCTAATTTACGCTTGTGATAGTTGTCCGAAAAAGTTTGCCCGTAAAAATTTATTAGAATTACATCAAACTTCACACATACCAAAAGAACAATGGGAATACATTTGTAATATATGTCCCGATAAAAAAACATTTGCAAGTTCATATTTATTAAATGTACACACAAGCATGAAGCATAAAAGAGAAGTAAACATTTGTCCGGTATGTGCCAAAGAGATTAGAGATAAAAAATCCTACGAAAAACATGTGCGTTTACACTATGAGGACAGTGGACCACGTGTTAAATGTCCTTACCCCGACTGTGATAGTTGGCTTAAAGATGAAGACAATTTAAAACAACATTTGACGCGACACAATCCTGAAGGTATAATTTATAAATGCAATGAATGCGGTAAGGAATGTAAAAATCGTCGAGCTTTAACGAACCACAAGCGTTATGCTCATTCGAATACGATTTTTCAATGCGATCAATGTGAGAAAACATTTAAGAAATCAATTTCTTTAAGAGAACACTTGACACAACATACTGGCGAAACTTTGTATAAATGTCCTTTTTGTACGAGAACCTTCAATTCAAACGCAAACATGCATGCTCATAAGAAGAAACAGCATCCTATAGAATGGGAAGAGTGGCGTAAAAATAAACGTGGCAGTGCTCAGAAGTTAATAAATAGTAAAAATCCTTTAAATCAAAGTGATGAAACTCTAATGGAATTAAATGATACATTACATTTATTATAA
- Protein Sequence
- PLEENYLKDVEFNDESTLDDDDCRTSDDYEPSVSSEQEFSMDEETVNDKDDELQNDTIIKHNTRSKRHKNLEKEKAITKKKRIVQRLDPIHTEEMIKKHIPMGCNLCVFVGTTFSDIVQHFRSVHPKVRPYIMCCDKKLSKRFFVAQHALKHEDPNCFRCDDCSKSFTTISGLRTHNLSYHARNEDLIYACDSCPKKFARKNLLELHQTSHIPKEQWEYICNICPDKKTFASSYLLNVHTSMKHKREVNICPVCAKEIRDKKSYEKHVRLHYEDSGPRVKCPYPDCDSWLKDEDNLKQHLTRHNPEGIIYKCNECGKECKNRRALTNHKRYAHSNTIFQCDQCEKTFKKSISLREHLTQHTGETLYKCPFCTRTFNSNANMHAHKKKQHPIEWEEWRKNKRGSAQKLINSKNPLNQSDETLMELNDTLHLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00200270;
- 90% Identity
- -
- 80% Identity
- -