Basic Information

Insect: Calliphora vomitoria
Gene Symbol: grau
Assembly: GCA_942486075.2
Location: CALNXM020000666.1:196680-200248[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.3e-05 0.0041 17.7 2.9 1 23 295 318 295 318 0.97

2 8 2.1e-05 0.001 19.6 0.2 2 23 324 345 323 345 0.96

3 8 0.00046 0.023 15.4 0.2 2 23 354 376 353 376 0.95

4 8 0.011 0.56 11.0 0.2 3 23 384 404 383 404 0.96

5 8 0.00073 0.036 14.7 3.2 2 23 413 434 412 435 0.95

6 8 0.00013 0.0064 17.1 0.1 1 23 444 467 444 467 0.97

7 8 1.4e-06 7e-05 23.3 0.8 2 23 474 495 474 495 0.98

8 8 0.00075 0.037 14.7 2.9 1 23 501 524 501 524 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.3e-05	0.0041	17.7	2.9	1	23	295	318	295	318	0.97
2	8	2.1e-05	0.001	19.6	0.2	2	23	324	345	323	345	0.96
3	8	0.00046	0.023	15.4	0.2	2	23	354	376	353	376	0.95
4	8	0.011	0.56	11.0	0.2	3	23	384	404	383	404	0.96
5	8	0.00073	0.036	14.7	3.2	2	23	413	434	412	435	0.95
6	8	0.00013	0.0064	17.1	0.1	1	23	444	467	444	467	0.97
7	8	1.4e-06	7e-05	23.3	0.8	2	23	474	495	474	495	0.98
8	8	0.00075	0.037	14.7	2.9	1	23	501	524	501	524	0.96

Sequence Information

Coding Sequence: ATGAATTGTATGTTGTGTTTGAAAATAATTGAAAATGTTAACAATCGTATCACAATTAATTCCACCCAATGGCAAGAACTAAATATACAATTTATTGTTGAAAAATATCTGTGGAAAATGGAACATTTTAATACCTACTCTCATATATGCCAAGGATGTTGGCAGGAATTATACAATTTCCACAACTTTTACACAGATATAGAAAAGGCGCATACGAATTTAAATACGTTAATAAAAAGTGAAGTAATTTCGGACGATGTTTCCAGCGAAAAAGGAGAGCATGAGGAAAAAATAGAGAATTCACAACTTGAACCGGAAATTTTATTGCTAAAGGAAGAAAATCCTTTAGAAATCTTTGAAAAAGAGGAAGTGGAGCAATTCAGTAATTCCAAAAAAAGGTTAAAACGTAAATGTTCTACGAAAAAAAGTGCGAACGATGTGCAAAATAATGAAAAAAGTAATTCAAAAAAAAAATTGAAAAAAGAAAAGAGTAAAGGTGATACTAATAAAACGGAAAATTATCAACATCAGGAGAAAAATAAAACTAAATTGAAGGAAGTAGAAAATGATTCTAAAGAAAGTAATTTCGTTGAAAATTTTAATGATCTGGATGACACTAGATTTGATAGTGATGACGAGCCAATAAATTCTGCTGATAAGTTTAAATTACATGCTCAAAGGCAAGAACATGATAAATTTATTGCCGAAAATCTAGAAATAACCTgctgtatttgtcaaattccgttggaaacattttccataacagttaaacattacaaagaggaacacaatcaacgtggatacgccgtatgttgtaatcgaaaactttatgaccgttcggaaatatttgaccattttaagttgcacgaaaatccggaatatttcaaatgtaaatactgtgataaagtattgtctagccgtgtatgcctaaagctgcacatcaaaaatattcatgaacacaaaagcattgagtgtgatatctgcggaaaaagtttgtcaactgaatcaagtctgaaaatgcataagttgatgcatgatgctgaaaataatgaaaaaataccatgcaaacaatgtgataagtcTTACCTTTCtaaatattccttagccaatcatatacgcgcagttcacttaaaaagttaccacaaaatctgtgatctatgtggggcatctatatcaggaaaatctagatttaaacgtcacatgctggaacatgaaggtaaaccagcaccaatggtaacttgtgaggtatgtggtcgtcgtttggccgatatgaaatgtttaaagcgacacatgaattcacatcacccgccggaaggtgttaaaaatgaattcaattgtcccatatgcatgaaaatttttgctagtccctccaatgttaagatgcacataaaagttgtgcacgaaaacagttacgaacgaaagtgtaatttatgtgagaaaacttttaaaagaccagatgcgttaaaggatcacatggctaagcatattggaaagccgttacattcttgtggttggtgtcctaaaacgttttattcaaatggccagatgcatgctcatcgcaaaagagtccatccaattgagtggcaagaatctgtgcgagaaaaATTTTCCGGAAATTTACCAGAAAAATATATTTCAAAACCATTAGAAAATCAATCCTCCAAATAA
Protein Sequence: MNCMLCLKIIENVNNRITINSTQWQELNIQFIVEKYLWKMEHFNTYSHICQGCWQELYNFHNFYTDIEKAHTNLNTLIKSEVISDDVSSEKGEHEEKIENSQLEPEILLLKEENPLEIFEKEEVEQFSNSKKRLKRKCSTKKSANDVQNNEKSNSKKKLKKEKSKGDTNKTENYQHQEKNKTKLKEVENDSKESNFVENFNDLDDTRFDSDDEPINSADKFKLHAQRQEHDKFIAENLEITCCICQIPLETFSITVKHYKEEHNQRGYAVCCNRKLYDRSEIFDHFKLHENPEYFKCKYCDKVLSSRVCLKLHIKNIHEHKSIECDICGKSLSTESSLKMHKLMHDAENNEKIPCKQCDKSYLSKYSLANHIRAVHLKSYHKICDLCGASISGKSRFKRHMLEHEGKPAPMVTCEVCGRRLADMKCLKRHMNSHHPPEGVKNEFNCPICMKIFASPSNVKMHIKVVHENSYERKCNLCEKTFKRPDALKDHMAKHIGKPLHSCGWCPKTFYSNGQMHAHRKRVHPIEWQESVREKFSGNLPEKYISKPLENQSSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922335;
90% Identity: iTF_00200170;
80% Identity: -