Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020001264.1:27275-28563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 2.2e-06 0.00011 22.7 2.9 1 23 203 226 203 226 0.96

2 6 3e-05 0.0015 19.1 4.0 1 23 234 257 234 257 0.98

3 6 8e-06 0.00039 20.9 1.5 1 23 263 285 263 285 0.96

4 6 3.7e-06 0.00018 22.0 0.6 1 23 294 316 294 316 0.98

5 6 1.7e-05 0.00086 19.9 3.7 1 23 324 346 324 346 0.98

6 6 0.00022 0.011 16.4 0.5 1 23 352 375 352 375 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	2.2e-06	0.00011	22.7	2.9	1	23	203	226	203	226	0.96
2	6	3e-05	0.0015	19.1	4.0	1	23	234	257	234	257	0.98
3	6	8e-06	0.00039	20.9	1.5	1	23	263	285	263	285	0.96
4	6	3.7e-06	0.00018	22.0	0.6	1	23	294	316	294	316	0.98
5	6	1.7e-05	0.00086	19.9	3.7	1	23	324	346	324	346	0.98
6	6	0.00022	0.011	16.4	0.5	1	23	352	375	352	375	0.96

Sequence Information

Coding Sequence: ATGATGAATCAAAATGTGTGCCGGTTCTGCTTAAAGGAAAATCCTACCCAAACATATAAAATTTTTGATAATTATAACAATTTGTGGGAGGATTTGCGAGTGTGTTTACCGGCTTTCTTGAAATGTGAACACAATGATGGATTGCCACAAATTATCTGTAATGCATGTTGGCTGCTGGTGCAACAGTTTAAAGATTTTCGCAAACAATGTGTGCTGGCTGATCAGGAGTTGAAAAATCGTTATGCTGATTATAAAAACCAGGCTGTTGAGGAAGTCTTGGGCTTGATAGAAAAGCTAAGACAAGAGGACAACAATATGATAAATAACTGGCAGGGGAAAGAGATATGCCATTTCTATGAAGAGTCTCAAAGTTTTAATGATTTTGACACCTCGGAAATCTCCCATTTGTTCAGTGATTTCGATTTGTATAGCTCCTCACATGATAGCGGCATATTTGAGGAGGATTATTCGCAACAAAATTCCTACAATTTTGAAAATTTTCTACAAACAACAGCAAATCAAAACAACTCCTCAGATCAGTCTTCAGCTTCTACCAAATCTACAGAATCCGATACCTCAAACAGAAGAAAGTCCTATAAAGGTCCCTTTCCCTGTAATCATTGTGATAAAAAATTCACCCGGAATTTTCAGCTGAAACTGCATCTCATATCAGTGCATCAAATTGGAGATGGCCTGCAGTACACCTGTAAAATGTGCAGCAAAACATTTGCCTCCAATCACAGTCTTAGTTATCACCAAAAGTCAGTGCACTACCAGCAGAAGCCTCATTTCTGTCCACAATGTGATAGACAATTTGTGCTCAAATCCCAGCTGGTATCACACATGCGCATACATACGGGAGAAACAAAGCCACGCAACTTTGAGTGCCAGGAGTGTGGTAAAAAATGGCCTACTAGATCGGACTTAAGGACGCACATGAGATCCCATGATCCCAATATGGAGCGGCCGTTCAAATGTGATCGCTGTGAGAAGAGTTTTTTCACCCGAGGTCATCTAACTTCACACCAGTTGGTACACACTGGTGAAAAACCATTTGCCTGTGAATTCTGCAATAGATCTTATCAAAGTGTGGGCAACTTGAATAATCATATGGCCCGCAGGCACATGCAGGAAATTGAGCATACGGAACAAAAGTCCTTGGAAGACTATCGTATGGATAATAATGAGACACCAGCGGAAATGGTATTAATGGAACTATAA
Protein Sequence: MMNQNVCRFCLKENPTQTYKIFDNYNNLWEDLRVCLPAFLKCEHNDGLPQIICNACWLLVQQFKDFRKQCVLADQELKNRYADYKNQAVEEVLGLIEKLRQEDNNMINNWQGKEICHFYEESQSFNDFDTSEISHLFSDFDLYSSSHDSGIFEEDYSQQNSYNFENFLQTTANQNNSSDQSSASTKSTESDTSNRRKSYKGPFPCNHCDKKFTRNFQLKLHLISVHQIGDGLQYTCKMCSKTFASNHSLSYHQKSVHYQQKPHFCPQCDRQFVLKSQLVSHMRIHTGETKPRNFECQECGKKWPTRSDLRTHMRSHDPNMERPFKCDRCEKSFFTRGHLTSHQLVHTGEKPFACEFCNRSYQSVGNLNNHMARRHMQEIEHTEQKSLEDYRMDNNETPAEMVLMEL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260047;
90% Identity: iTF_00045601;
80% Identity: iTF_00260047;