Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000411.1:549240-552954[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 7.1 3.5e+02 2.2 0.2 3 23 241 262 239 262 0.92

2 10 0.049 2.4 9.0 0.3 6 23 271 288 271 288 0.98

3 10 0.00013 0.0063 17.1 2.8 1 23 294 317 294 317 0.97

4 10 0.0003 0.015 15.9 0.1 2 23 323 344 322 344 0.95

5 10 0.00029 0.014 16.0 1.3 2 23 353 375 352 375 0.94

6 10 0.47 23 5.9 0.4 3 23 383 403 382 403 0.94

7 10 0.0037 0.18 12.5 2.7 2 23 412 433 411 434 0.94

8 10 1.8e-06 8.7e-05 23.0 0.1 3 23 445 466 443 466 0.96

9 10 9.8e-07 4.8e-05 23.8 0.8 2 23 473 494 472 494 0.97

10 10 0.0022 0.11 13.2 1.4 1 23 500 523 500 523 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	7.1	3.5e+02	2.2	0.2	3	23	241	262	239	262	0.92
2	10	0.049	2.4	9.0	0.3	6	23	271	288	271	288	0.98
3	10	0.00013	0.0063	17.1	2.8	1	23	294	317	294	317	0.97
4	10	0.0003	0.015	15.9	0.1	2	23	323	344	322	344	0.95
5	10	0.00029	0.014	16.0	1.3	2	23	353	375	352	375	0.94
6	10	0.47	23	5.9	0.4	3	23	383	403	382	403	0.94
7	10	0.0037	0.18	12.5	2.7	2	23	412	433	411	434	0.94
8	10	1.8e-06	8.7e-05	23.0	0.1	3	23	445	466	443	466	0.96
9	10	9.8e-07	4.8e-05	23.8	0.8	2	23	473	494	472	494	0.97
10	10	0.0022	0.11	13.2	1.4	1	23	500	523	500	523	0.95

Sequence Information

Coding Sequence: ATGAATTGTTTATTGTGTTTGAAAGTATCCGAAAACATTGAAGAAATTCTTGCAGTTAATTCCGCCGATTGGCAAGAACAAAATATACAATACATCGTTGAAAAATATCTGTGGAAAATGGAACATTTAAAAATCGACTCCCATATATGCCAAAAATGTCGGCAGGAATTATACAATTTCCATAGATTCTACACTGAGATAGAGAACTCACATAAACATTTTAATAGTTTCATGAAAACGGAAGTAATTTCTGATGATATTTACAACGGAAAAGAAGAATTACCGGAAACAAATTCTAAAGAAAATATAGAAAATTCTCAACTTGAGCCAGAAATTCTATTGATAAAACAAGAAAATCCTTTAGAAGTTTATGAAAAAGAGATAATAGAGGAATTTAATCACGTAAAACAAAAAATAAAACGTAAATCCTCTACTAAAAAAGTTAAAAATGTAAAACGACATTGTAAAACAAAGTCTAAGAAAGAAAGAATTAAAACTGAATTGGCAGATATAGAAAATCCTACAAAAATTGCCATAAAATTGGAGTTGGATGTGGAAAATGACACTAAAGAACATAATTCTGTTGAAAATGTTAAAAATCAGGATGATATCAGCTGTGAAAGTGATGACGAACAAGCAAATACGATCGAGTCAGCTAAAACACGTATCCAACGCGAAAGAAATGATAAATTCATAGCCGAACATTTTGAAATGAGCAACTGTAGCTTTTGTCAAATACCTTTGGCAACATTTTCCATACTGATTAAACATTACAAAGAGGAACACAATGAACGTGGATATGTTCTTTGCTGTAATCGAAAGTATAATAGTCGTACAGATTTAATAGATCACATTAAGTTGCATCTAAATCCAGAGCAATTTAAATGCAAATATTGTGATAAAATATTGTCTAGTCGTGGGTGCTTGAAGCTGCACATAAAAAATGTTCATGATTCAAAGAGTATTGAGTGCGATATTTGTGGCAAAAGTTTGGCAAATGAATATAGTCTCAAAATGCATAAACTATTACACATTGTGAAAGACAATGAAAGAATACCATGTACACAATGTGATAAGACCTTCGTCTCTAAACAATTCCTACACTCTCATATAAGCAATGTTCATTTAAAGAAATACCATAAAATATGCGACCTATGTGGTGTTTCCATATTAAAAAAGCAAAGTTTCAAACGACACATGCTCGAACATCAAGGTAAACCACTACCAAAGGTAAGTTGTGAGGTTTGTGGGCGTCTTCTGTCCGATGTGAAATGTTTAAAGAGACACATGAACTCACATCATCCGCCAGAAGGTGTAAAAAGCGAAATTGATTGTCCTATATGCAAGAAAATGTTTGCTAATCGTGCCAGTCTTAAGAATCACATAAAAGTTGTTCACGAAAATAGTTGCGAAAGTAAATGTACAATGTGTGAGAAGACATTTAAAAGGCCCGATGCGTTAAAGGATCATATGGCTAAGCATATCGGCAAGCCGTTACATGCTTGTGGTTGGTGTCCAAAGGAATTTTATTCAAATGGTCAGATGCATGCTCATCGCAAAAGTGTGCATCCAATGGAATGGCAGGAATCAGTGCGGGAAAGACATTCTGGAAATTTACCAGAAAAATATATATCAAAATCTTTACAAAATGAATATGAGTATATTCTGTAA
Protein Sequence: MNCLLCLKVSENIEEILAVNSADWQEQNIQYIVEKYLWKMEHLKIDSHICQKCRQELYNFHRFYTEIENSHKHFNSFMKTEVISDDIYNGKEELPETNSKENIENSQLEPEILLIKQENPLEVYEKEIIEEFNHVKQKIKRKSSTKKVKNVKRHCKTKSKKERIKTELADIENPTKIAIKLELDVENDTKEHNSVENVKNQDDISCESDDEQANTIESAKTRIQRERNDKFIAEHFEMSNCSFCQIPLATFSILIKHYKEEHNERGYVLCCNRKYNSRTDLIDHIKLHLNPEQFKCKYCDKILSSRGCLKLHIKNVHDSKSIECDICGKSLANEYSLKMHKLLHIVKDNERIPCTQCDKTFVSKQFLHSHISNVHLKKYHKICDLCGVSILKKQSFKRHMLEHQGKPLPKVSCEVCGRLLSDVKCLKRHMNSHHPPEGVKSEIDCPICKKMFANRASLKNHIKVVHENSCESKCTMCEKTFKRPDALKDHMAKHIGKPLHACGWCPKEFYSNGQMHAHRKSVHPMEWQESVRERHSGNLPEKYISKSLQNEYEYIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200183;
90% Identity: iTF_00259937;
80% Identity: -