Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000376.1:285120-287066[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.019 0.92 10.3 2.9 1 23 263 285 263 285 0.97

2 9 0.00056 0.027 15.1 4.3 1 23 291 315 291 315 0.98

3 9 8.9e-05 0.0044 17.6 1.4 1 23 323 348 323 348 0.97

4 9 7.7e-05 0.0038 17.8 2.1 1 23 357 379 357 379 0.97

5 9 7.6e-05 0.0037 17.8 0.9 1 23 387 411 387 411 0.96

6 9 0.00093 0.046 14.4 0.9 1 23 417 439 417 439 0.97

7 9 0.0012 0.059 14.1 0.8 2 23 446 468 445 468 0.94

8 9 0.053 2.6 8.9 1.5 1 23 474 496 474 496 0.97

9 9 1.4e-06 7e-05 23.3 0.6 1 23 502 524 502 524 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.019	0.92	10.3	2.9	1	23	263	285	263	285	0.97
2	9	0.00056	0.027	15.1	4.3	1	23	291	315	291	315	0.98
3	9	8.9e-05	0.0044	17.6	1.4	1	23	323	348	323	348	0.97
4	9	7.7e-05	0.0038	17.8	2.1	1	23	357	379	357	379	0.97
5	9	7.6e-05	0.0037	17.8	0.9	1	23	387	411	387	411	0.96
6	9	0.00093	0.046	14.4	0.9	1	23	417	439	417	439	0.97
7	9	0.0012	0.059	14.1	0.8	2	23	446	468	445	468	0.94
8	9	0.053	2.6	8.9	1.5	1	23	474	496	474	496	0.97
9	9	1.4e-06	7e-05	23.3	0.6	1	23	502	524	502	524	0.97

Sequence Information

Coding Sequence: ATGTTTAATACAGATTTAAAATTAACTCTATGTCGTACCTGCCTGCAAACTCTTGCACAAACTAAGCATTTTAACATTTTCAATACCTTGGATTTGGCCAAAAAGTTAATGTCATGTTCTACGCTGCCGGTGGAAGCCACCGATGAGTATCCTCAAAATGTTTGTGTACAGTGTTACGAACAAATTTTATTATATTATGAATTTCAACAAATGTGCCACAATGCCTTGGATAAATTTAATGAGCTGTTAAAAACTAAGGAATGGGTGGCAGAAGACAATCTGAAGGACGAGGAGCAAGGTGTAGGTGAAGCAAAAGATCCCTTAAATGAAGACCAAAAATTGCCCAATTATTTAGAAGAGAAACCAATTGAGCTGTTGGCTAATATAGAAATTTTAAATGATTTCTCGGTAAAGAAAAAAAGGGGCAGGCCTCAAAAGAAAAAAACTAAAGCCGAAAATCTGAAAAATATTGCAATACAGGACGAAAGTAATATAAATATTCTAACAGAGGATGAGACAAAAGACTCAAAAGAACATTTACAATTTGAACATGAAAGTGAGTTTAAATTCGAAATTGAAAATACTGCTCTAAATGAAGACTGCATAGATGATAAAAGTGAAATTTGTAAAGACCAAATATCTTTAACAAATTTTACAGAAAAAGAAGATGTAATATACGCTGTATGTAAAGAAGAAGATAAGCCTCAAGAGGAAATAGAACTTAAGTTTCTCTCAGATACCGAAAGCTGTTCATCTACCCAAGAATCCTTATACCAAAAACGTTGCCACCAATGTGATCGTTGCGGTGAAAACTTCAATGCTCTCCATCGTTTAGAGGCACATAAAAGACAACATGATGGCCTACCACCCTACACCTGTACCTTTGAGGGTTGTGAACGTTCCTTTAATCGTTGGCATTTTTTCAACAAACATCAAAAGGAACACAAGCTAGCACCAGGGAAAAGTTTCAAATGTGATTTGGACAACTGTGAACGGGTGTATAAAAATAAATCAGCCCTTAATATACACAAACGTAAATTTCACAATTTCGGACCAGAACTCAAGACCCACATGTGTGAAGTGTGTGGCAAAGTATTTAAATCGTCGGCCGTTTTAAATGATCACCACTATACACACATTGATAAGACCCAATTGCCTTATGCCTGCGAAGAGGAGGGCTGCACTAAACGTTTTTCCAACAAGGAAAAACTAAAAGTTCACAAAATGCGTCATGCGGGCATAAAGAACTTCAGTTGTCCCTATTGTGGCATGCGCAAGACAACACGCAATGAACTTAAGATACATATAAACTATCACACCCTGGAAAGAACATGGCCTTGTCGATTTTGTCCCAAAGTCTGCAATAGTGCCGGCAATTTGAAAATGCATGTGAAAAATATGCATGAAAGAGCCAAAGATTTTGCCTGTCGTTTCTGTGAGAGGACTTTTGCCAAAGCGGATACCAAAAAATATCACGAAATGACTCATACGGGGGAAAAGCCACACGAGTGCAACGAATGTGGTCGGAGATTTGTACAACCAGCAGCATTAAGGACTCATCGCAAGATTCATTTGAGGCAGAAGGAGAAGTGTGTGGTGGTGAAGGAAACAAAAGAAGTACAAAGCACCGGGCCAGAGGAGACTTTTATAACGGAGGCTATTGTAGCAGAGATTTTAAGTGATACCAATGAAAATTTAAATTGA
Protein Sequence: MFNTDLKLTLCRTCLQTLAQTKHFNIFNTLDLAKKLMSCSTLPVEATDEYPQNVCVQCYEQILLYYEFQQMCHNALDKFNELLKTKEWVAEDNLKDEEQGVGEAKDPLNEDQKLPNYLEEKPIELLANIEILNDFSVKKKRGRPQKKKTKAENLKNIAIQDESNINILTEDETKDSKEHLQFEHESEFKFEIENTALNEDCIDDKSEICKDQISLTNFTEKEDVIYAVCKEEDKPQEEIELKFLSDTESCSSTQESLYQKRCHQCDRCGENFNALHRLEAHKRQHDGLPPYTCTFEGCERSFNRWHFFNKHQKEHKLAPGKSFKCDLDNCERVYKNKSALNIHKRKFHNFGPELKTHMCEVCGKVFKSSAVLNDHHYTHIDKTQLPYACEEEGCTKRFSNKEKLKVHKMRHAGIKNFSCPYCGMRKTTRNELKIHINYHTLERTWPCRFCPKVCNSAGNLKMHVKNMHERAKDFACRFCERTFAKADTKKYHEMTHTGEKPHECNECGRRFVQPAALRTHRKIHLRQKEKCVVVKETKEVQSTGPEETFITEAIVAEILSDTNENLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045582;
90% Identity: iTF_00259220;
80% Identity: -