Cvom000424.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000007.1:2567220-2581906[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.75 37 5.3 1.9 3 23 255 276 253 276 0.92 2 22 0.00011 0.0056 17.3 1.2 2 23 357 378 356 378 0.97 3 22 0.0021 0.11 13.3 0.8 1 23 455 478 455 478 0.96 4 22 0.43 21 6.0 0.8 2 23 486 507 485 507 0.96 5 22 3.2 1.6e+02 3.3 0.7 2 19 516 533 515 535 0.92 6 22 0.92 45 5.0 0.7 2 20 586 604 585 607 0.91 7 22 0.0056 0.27 12.0 0.4 3 23 688 709 686 709 0.95 8 22 0.0014 0.068 13.9 0.5 1 22 716 737 716 737 0.95 9 22 9.8 4.8e+02 1.8 1.7 2 23 749 771 748 771 0.90 10 22 0.2 9.6 7.1 5.6 1 23 784 806 784 806 0.96 11 22 0.021 1 10.2 0.2 2 19 833 850 832 852 0.94 12 22 0.0011 0.053 14.2 7.9 1 23 908 931 908 931 0.98 13 22 0.00028 0.014 16.1 0.7 2 23 1194 1216 1193 1216 0.96 14 22 9.1e-05 0.0045 17.6 2.2 2 23 1226 1248 1225 1248 0.96 15 22 0.0039 0.19 12.5 2.8 3 23 1271 1292 1270 1292 0.97 16 22 0.00031 0.015 15.9 1.7 2 23 1302 1324 1301 1324 0.96 17 22 0.00051 0.025 15.2 0.6 2 23 1333 1355 1332 1355 0.97 18 22 0.006 0.29 11.9 3.3 1 23 1361 1383 1361 1383 0.96 19 22 0.00042 0.02 15.5 0.2 1 23 1389 1411 1389 1411 0.97 20 22 0.081 4 8.3 0.4 3 23 1419 1439 1418 1439 0.98 21 22 0.00086 0.042 14.5 0.3 2 23 1445 1467 1444 1467 0.94 22 22 0.31 15 6.5 1.8 1 23 1473 1496 1473 1496 0.97
Sequence Information
- Coding Sequence
- ATGACCAGCAATAATACAAATGAGTGTTTCATAAATGGAATTCAATATAAGTGTCGTACTTGCTTTGAACCAGGACAAGCTGTTTACTCCCTAACAGACGAATGTAGCAACTCAAAAACTTGGTGTGATTTGTTAAAGGATATTGCACAGTTGCAGACCAACGAGGACGATCTACTCCCAAGGACTGTATGCTGCAAATGCATGGATAAACTTATTAGTTACTACGATTTTAAACTTCAGATACATAATGTAAATAAAAAATACTCTCAGTTATTGGCAAGTAGTAACAATACAATTCAGGGAGGAATTTTAAATGAAATTAATAATTTTGAGGATTCCTTAAAAGCATCTGATAATATTTCGACGCAAAATACACCAGAAATAAAATTGGAGGAAGAACAGGTTGTTCCATATGACATTGTTCTCAGTGACAAAAATAAATTACATGGAGAGAGTGAAGAAAAATTGCAAAATAAAGATGCTATTGGACTTTATACGGATACCTGCAATGAGTCGATCAATTCGATCCTAGAAATCCCTAGATCGCTAAGTGAACAAAGTAATCAAACATTAAACGATGACGGAAATGAATCGAGCTCTTCATCGTTTGATGAATGTGATAATGTGCCTCTAAAAAGATTGAAGAATGAGAAATGCAATACCAATAACATTACTCCTGTTAACAGACAAGCGATCGAAGGAAATGTATTTGAAAAGGATTCCGACTATGATCTAATCGAAAAAGTGAACCGTCGTTTTCTATGCATCATATGCAAAAAAGCATTTGCATTAAAAAGAAATTGTCTGCGACATATAAAAACCATACACACTCGTCAAAATGAATCTAGGCAACCAGTCGATCAGAAAACAGCTGCAGCAAATGATACAATCGAAAAAGACAGAATATTCCCATGCGCATTTTGTAAACAACATTTTAACTGTAAGGACTATTTACAAATGCATCTTACATATATGCATCCTTTCGAATCATTAGATTCGAACACTAAGTTTATAGAACGTTTATTTGGAGATCGTTTATACAGCAAGCCTACAGCATGGTGTCTGGTAGAATGTAAATTGTGTGATACAACATTTACAACAACTAAAGAACTTCGTCAGCACTTAGAAAAACACAGTGATGTTAACACTCTTCATGGCTTAGACTTGGACAGTAACATTGTCCAGCATTTATTTCCAAATACAAACAATTTAAACATTGTCAAGAAATGTATATGCAATGATATTCGTGAGAAACGTTGGTTCAAATATTACACAGTGTTAAATGAACATTTTTATGAAATGTCTGTTAGCGATACGGAACCCGAAGATTTGGTAGAAGAAAATGCAGAGCGTACCGGAAAATACACGTGTCAATTGTGTCCTCAAGGTTTTTCGTATAAATATCAAGTTTTCTCACATTTAAAGGAAGCTCATAACAAGAAAGAAATTTCTTTGAATTGTAGCCAATGCAAATTGGAATTTATTTCAATAAAAATGTACGAACTACATAAACAAACCCACTGCCAAAATAAACATAAAGTTTTAGTTTGTCCACATTGTCCAGGTAAGTTTGTTTGGCCGGAAAATATGAAAAAACACAATTGTGCCAGGAAAGTACCAGAAACTTTAGCGGCAGTTACTAATGATCAACTAAAATGTAACATATATGATCGTAAATTTGAGGAGAAGACAGAAGATCTAGATTATTTAAGGACACACAGTAATGACAGGACCATGCCTGCAAAAACTATAATACGATGTGGTCTTTGTATAAATTCCTTTGAAACACTACAACATTTACGTAAACACATGCCGTTGCATGCCGATGGCGTAACTGGTATAGACTTTAAAGGATGTATTTATGTAAAATGCTTTGAAGGTACCAAATCGATTAATTTGGTGCCACTGCAGCTGAGGATTCAAAATGCCTATCATAAATCTCAAATTAGTTGTTTTTACCAAGCCATCGATAAGTACGGCAATGAACTAGACCTTTCAGACTCAGATAGTAACACAGAAGAGGATGCAGATGATAATCAAACTATAAAAAGACAATACGGGTGTGACATTTGCAAAGAAATGTTTGCAAAACGGAAACTTTTATTAAACCATCAACAAGAACAGCACAATAATGTGCCACTTCCCTTTACGTGTAAGGACTGTAATCAGCAATATGTTAGTCTTGATTTGTTACAACAACATTTAAAAAGAGTCTGCGGGAATGAACATCGTCGATTAGCTCAACAATGTGATTACTGTAATGATCGCTTTATTTGGCATAATAATCTATTGAAGCACAAGGAATTACAGCATCCCATGGTCTCCCAAACTTCCTCCAGTGTTCAACTTCATTATTGTCTGCTGTGCCCGAAAAGATTCATCAGTGTTGAGCACTTCAAAGAGCACTTAAGTCACCATCGTTTGACGCCTGATGATGTCAAGACCGTTGAAAGTATAGTAAATTCTACAAGGTGGCCAAATGGTGACAAAACAATTAAATGTAAACTATGTGGCCTAATATTTAAAAGTATGTCCAGTTTGAGTGAACATTTTTCACCTACAAATCCCCAAAATTTGTGTGCCAATTCGCATTCACTGGCAAATTACTCAATTACAAATCAAAAAGGATTCGAATTGCATTTAGAACTGGATTCTGAAACAGAAGTAGAAGATGAAGAAAAAGCGATACATAATGAAGAGGATAAGAAACATTTATTTTCCTATAAGTGTTGCATGTGCAGTAAATCGTTTAAGCGAAAATATCAAATAGCTCATCATCAGCGATCAATGCACAACTATGAACAGCTAAAGCTAAAATGTGAACGTTGTATTTTTAGTACAGTCTCACAGaaagttttagattatcataaagccacgcagtgttttaatTATAAATGTCGCACTTGCTTTGATCCAGGACAAACAGTCTATCACCTTACAGATGAGGCCAACAGCACAAAAACTTGGCGTGATTTGTTAAAGGATGTTGCTCCTATACAGACAAATGACGACAGTTTACTTCCAAATACCATGTGCTGCATATGCTCGGAGAAACTTCAAAGCTCCTACGATTTTATACTACAGATTCATAATGTGAATAACAAATACTCAAAATTATTGGAAGAATGTAATGAAATGTATACTTCTACCGATTGCTTGGCAGAATCTACCATAGACTTGCCATTGAAAGTGGTTATGCCGGAAATTAAGTTGGAAGATGAACTGGTTAATCCATATGAAATGGTTTTAAATAACAACAATGAATTGGGTGAAATTCCTGCAACAATATTTAAAAATGAAGACACTGATGATGATGATGATGATCCCTTTACGGATACTTATAATGATGATCACGAATCAACTTCAGACCAATTGGAAGAAAGTGGAGCAACAGCCGAAGAAAAAACGACAAAAACAGATGTTAAACAATCAGAAGAAGGTGAAGACCTGCTCCGCAATCGTAAAATACTTACTAGAAAAGCTAAACATCAACAACCAAATACAACAACAAATACAACTCCGAATATTTCACACGCTGATATAATGAAAAATATTGAAAATGTTGGAAAAGATTCCATTGTTTGCGAACTATGTTCAAAAATATATGCTACTAAGTCTAAATTTAAAAGACATCTTCAAAGAGTACACCCGCCAGATGATATAGTAGGACCAATTACTTGTGAAACATGCTCGAAAACATTTGCCACTACGTATAAACTTAAAAGACACCAACAAAGAATGCATCCAGAGATATATAAAACAACTAACAAACCGAGGACTATACATAACGATGTAAAAGGGCCAGTTGATTGCGAAAAATGTTCCAAGACATATGATAATAGGCTCAAATTTAGAAGACACCAAAGAAGAGTACATCCAGAGGAATTTGTAAATGAAGAGATAGTTTGCGAAAAATGTTCGAAATCATTCGAGAATATGTACAAATTTAGAAGACACCAACAAAGAGTACATCCAGAACCGAATCAAGAGATCAACAAATGTCCGCTATGCTCAAAAGAATTTAAAAATAAATTCTATGTAAATGAACACATAAAAGTCGTACATGATAAAATAAAGCCGTATAATTGTTCGCATTGTCCAAAAACGTTTGCATCTGCCCATTCCAAGCGAATTCATGAACTTTCTCACACTGACGATTTCCCCTATGCCTGCGAATGGTGCGATAAACGTTATCGATTACCCAGTAAGTTAAAGATTCATACTGAAATTCATACAACCAAACCAGAACTTTTATGTCCCATCTGTAAAAGAAGCCAAAAGTCGGAGAAAGACTTGGAGGATCATGTGAAAAGTCACGACGACAATCGTTTACAGTGTCCATCGTGCGGCAACTTGTTTAGAAGAAATTCACAACTTAAAGATCACTACAATGCAGTTCACTTAAAATTGCGTCCCTATAAATGTGAATTTTGTGAATTAGGCTTTGGTGATCGAAAAACACGACGTATGCATGAAAGAAAATATCATCCGAAAGACCGACCTGTACCAACGTGA
- Protein Sequence
- MTSNNTNECFINGIQYKCRTCFEPGQAVYSLTDECSNSKTWCDLLKDIAQLQTNEDDLLPRTVCCKCMDKLISYYDFKLQIHNVNKKYSQLLASSNNTIQGGILNEINNFEDSLKASDNISTQNTPEIKLEEEQVVPYDIVLSDKNKLHGESEEKLQNKDAIGLYTDTCNESINSILEIPRSLSEQSNQTLNDDGNESSSSSFDECDNVPLKRLKNEKCNTNNITPVNRQAIEGNVFEKDSDYDLIEKVNRRFLCIICKKAFALKRNCLRHIKTIHTRQNESRQPVDQKTAAANDTIEKDRIFPCAFCKQHFNCKDYLQMHLTYMHPFESLDSNTKFIERLFGDRLYSKPTAWCLVECKLCDTTFTTTKELRQHLEKHSDVNTLHGLDLDSNIVQHLFPNTNNLNIVKKCICNDIREKRWFKYYTVLNEHFYEMSVSDTEPEDLVEENAERTGKYTCQLCPQGFSYKYQVFSHLKEAHNKKEISLNCSQCKLEFISIKMYELHKQTHCQNKHKVLVCPHCPGKFVWPENMKKHNCARKVPETLAAVTNDQLKCNIYDRKFEEKTEDLDYLRTHSNDRTMPAKTIIRCGLCINSFETLQHLRKHMPLHADGVTGIDFKGCIYVKCFEGTKSINLVPLQLRIQNAYHKSQISCFYQAIDKYGNELDLSDSDSNTEEDADDNQTIKRQYGCDICKEMFAKRKLLLNHQQEQHNNVPLPFTCKDCNQQYVSLDLLQQHLKRVCGNEHRRLAQQCDYCNDRFIWHNNLLKHKELQHPMVSQTSSSVQLHYCLLCPKRFISVEHFKEHLSHHRLTPDDVKTVESIVNSTRWPNGDKTIKCKLCGLIFKSMSSLSEHFSPTNPQNLCANSHSLANYSITNQKGFELHLELDSETEVEDEEKAIHNEEDKKHLFSYKCCMCSKSFKRKYQIAHHQRSMHNYEQLKLKCERCIFSTVSQKVLDYHKATQCFNYKCRTCFDPGQTVYHLTDEANSTKTWRDLLKDVAPIQTNDDSLLPNTMCCICSEKLQSSYDFILQIHNVNNKYSKLLEECNEMYTSTDCLAESTIDLPLKVVMPEIKLEDELVNPYEMVLNNNNELGEIPATIFKNEDTDDDDDDPFTDTYNDDHESTSDQLEESGATAEEKTTKTDVKQSEEGEDLLRNRKILTRKAKHQQPNTTTNTTPNISHADIMKNIENVGKDSIVCELCSKIYATKSKFKRHLQRVHPPDDIVGPITCETCSKTFATTYKLKRHQQRMHPEIYKTTNKPRTIHNDVKGPVDCEKCSKTYDNRLKFRRHQRRVHPEEFVNEEIVCEKCSKSFENMYKFRRHQQRVHPEPNQEINKCPLCSKEFKNKFYVNEHIKVVHDKIKPYNCSHCPKTFASAHSKRIHELSHTDDFPYACEWCDKRYRLPSKLKIHTEIHTTKPELLCPICKRSQKSEKDLEDHVKSHDDNRLQCPSCGNLFRRNSQLKDHYNAVHLKLRPYKCEFCELGFGDRKTRRMHERKYHPKDRPVPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -