Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000258.1:264296-266047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.7e-05 0.0018 18.8 1.3 1 23 259 281 259 281 0.98

2 8 6.1e-08 3e-06 27.6 1.2 1 23 299 321 299 321 0.99

3 8 1e-05 0.0005 20.6 1.3 1 23 327 349 327 349 0.95

4 8 0.0086 0.42 11.4 2.0 1 23 355 377 355 377 0.95

5 8 5.5e-05 0.0027 18.3 0.9 1 23 383 405 383 405 0.96

6 8 0.001 0.051 14.3 5.1 1 23 411 433 411 433 0.98

7 8 2e-07 9.7e-06 26.0 0.7 1 23 439 461 439 461 0.98

8 8 0.0016 0.078 13.7 2.3 1 23 467 489 467 489 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.7e-05	0.0018	18.8	1.3	1	23	259	281	259	281	0.98
2	8	6.1e-08	3e-06	27.6	1.2	1	23	299	321	299	321	0.99
3	8	1e-05	0.0005	20.6	1.3	1	23	327	349	327	349	0.95
4	8	0.0086	0.42	11.4	2.0	1	23	355	377	355	377	0.95
5	8	5.5e-05	0.0027	18.3	0.9	1	23	383	405	383	405	0.96
6	8	0.001	0.051	14.3	5.1	1	23	411	433	411	433	0.98
7	8	2e-07	9.7e-06	26.0	0.7	1	23	439	461	439	461	0.98
8	8	0.0016	0.078	13.7	2.3	1	23	467	489	467	489	0.98

Sequence Information

Coding Sequence: ATGAATAGTACAACTATTACACTCTTGGAAAACTTTTGTAGAACATGCATGAATGGCGAAGTTGAAGATGAAAAAGAAACAAAAGCCAATAAACGCAAAACTATGTCCATTTTTAATGAAACAGAAAGTGTGAAATGCAAAAATATAACAATTATGGAATTACTTATGCTTACCACACCACAACTTAATATTGAAAGTGGCGACATGTTGCCCAAAACAGTATGCGAAAGTTGCCTTGAAAGACTCTTAAATGCTCACGAATTTCAGCAAATGTGTATAAGAGTTGAAGAAAAATTTCGACAAATGATTAAAGAACAAACGCCTGTAAATTCACAAATTATCACAGACCCTCTAATAGATAACTCTGCCGTAACTCAGGCTATAAACGATTTAAGTAATATATTAAAAATTGAAATGGATGAACCAATAATATACCAGCATGAGTCTACGTTTAACAATAAAAACATAAATGTGGACACGGAAGACATAAAATTTGAAACGGAAGAAAATCAATGGGAGGACTACAGTGATAGTGACGAATTTTGCGATGTCGACAGTGATAAGGATAGTGAATGGGAAACTCCCTCTAATGTTACAAAAAGTAAAAAAGGTCTGAAGAGAGCTGTAAAAAAGCTGAAAGATGTAACTTCTAGCAATCTTGAAAATTCTAAAGATAAAGACGATGAAAAAGATGATAGTCCTTCAGAGGCAAGTAAAGAAACTAAGACAAATTTAAAGGAAGCAAGTAATTCTAAGGATAACGGAAGTAAAAACTTTGTATGCGATGAGTGTGGAAACCGTTTATCAACGCGGAAAAGTTTAAAACGACATAAACGAATACATCTTAGGCCAGCAGTTGGGAGTGAGGAAGGTGAAACTAAAGCTAGAACTAAATATGAATGTGAAGTTTGTAAAAAGGTCTTTCAGCAATCAAGTTCATTAAAGGATCATATGAGAACACATACGGGGGAACAGCCTTATCTTTGCTCGGAGTGTGGGAAAGCTTTTAAAAGTTTAAGTAACATGAAGCAACATTTCCTCCGTCACGGTACCGATCGACCATATGTCTGTCAACATTGCCCCAAAAGATTTCCTTGTCTAAGTGATTTGGCGTCGCAtaaagttgtgcataataaaataaaatcacacatttgtgatatatgtggtgccggttttacgaaaccatatcttttgaaaaagcacaaaatgtatcatacaggtgaaagaaatcataaatgtgattactgtgacatgagatttgttttagctgatcaatgtcgaaggcatatgcgtactcatactggagaaaaaccatacaaatgcaaatattgtgaaagggcttttgcccaaagcaatgacttaattaaacacatgcgtgggcatataggagataatgtttacaaatgtgatttatgtccacaaggatttcgtctgcaatgtgatttacgagcacacttttatactcataaagatgatgacgaggaaactaaagttcgtaatttggaagctcttaaagaggaagaaagaagacttcaagtaaaatttggtctTGTGGGAGGTACATAA
Protein Sequence: MNSTTITLLENFCRTCMNGEVEDEKETKANKRKTMSIFNETESVKCKNITIMELLMLTTPQLNIESGDMLPKTVCESCLERLLNAHEFQQMCIRVEEKFRQMIKEQTPVNSQIITDPLIDNSAVTQAINDLSNILKIEMDEPIIYQHESTFNNKNINVDTEDIKFETEENQWEDYSDSDEFCDVDSDKDSEWETPSNVTKSKKGLKRAVKKLKDVTSSNLENSKDKDDEKDDSPSEASKETKTNLKEASNSKDNGSKNFVCDECGNRLSTRKSLKRHKRIHLRPAVGSEEGETKARTKYECEVCKKVFQQSSSLKDHMRTHTGEQPYLCSECGKAFKSLSNMKQHFLRHGTDRPYVCQHCPKRFPCLSDLASHKVVHNKIKSHICDICGAGFTKPYLLKKHKMYHTGERNHKCDYCDMRFVLADQCRRHMRTHTGEKPYKCKYCERAFAQSNDLIKHMRGHIGDNVYKCDLCPQGFRLQCDLRAHFYTHKDDDEETKVRNLEALKEEERRLQVKFGLVGGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045519; iTF_00200105; iTF_00259120;
90% Identity: iTF_00259120;
80% Identity: -