Basic Information

Insect: Calliphora vomitoria
Gene Symbol: -
Assembly: GCA_942486075.2
Location: CALNXM020000462.1:368348-370523[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0027 0.13 13.0 3.9 1 23 391 414 391 414 0.98

2 9 0.00081 0.04 14.6 0.2 1 23 421 444 421 444 0.96

3 9 0.0012 0.059 14.1 0.7 1 23 451 476 451 476 0.93

4 9 1.1e-07 5.4e-06 26.8 1.3 1 23 485 508 485 508 0.98

5 9 0.00054 0.027 15.2 3.1 2 23 526 548 525 548 0.95

6 9 0.00031 0.015 15.9 0.2 1 23 554 576 554 576 0.98

7 9 5.9e-05 0.0029 18.2 0.1 3 23 583 604 581 604 0.95

8 9 2.5e-05 0.0012 19.3 4.0 1 23 610 632 610 632 0.98

9 9 9.9e-06 0.00048 20.6 1.1 1 23 638 660 638 660 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0027	0.13	13.0	3.9	1	23	391	414	391	414	0.98
2	9	0.00081	0.04	14.6	0.2	1	23	421	444	421	444	0.96
3	9	0.0012	0.059	14.1	0.7	1	23	451	476	451	476	0.93
4	9	1.1e-07	5.4e-06	26.8	1.3	1	23	485	508	485	508	0.98
5	9	0.00054	0.027	15.2	3.1	2	23	526	548	525	548	0.95
6	9	0.00031	0.015	15.9	0.2	1	23	554	576	554	576	0.98
7	9	5.9e-05	0.0029	18.2	0.1	3	23	583	604	581	604	0.95
8	9	2.5e-05	0.0012	19.3	4.0	1	23	610	632	610	632	0.98
9	9	9.9e-06	0.00048	20.6	1.1	1	23	638	660	638	660	0.98

Sequence Information

Coding Sequence: ATGATAACATTAACGAAAAATAACGCGAGGGAACGGTGTCGCACTTGTTTGTGTAAACTACTGAAAGATGAAGACAATGATGAGAATGTAGACACTTATTTTTCAAACAAGTTTGTAGATATCAACACAAACAAGCAATTACAAGAAATGCTGGAAAAATATGTGTCCACAGAATGTGGAGTGGATTTGTGCAATGATCAATCATACCCGCAATATTTATGCTTGGAATGCTTGAAGCACTTGCAAACGTTTGAGACGTTTCGAAATAAGGCTATGGATAGTGCTAAGAAACTATACAAAGTCTTCAGTGGCAATTGCAAGGTACCTAAAATAGAGCTGAATGATGATGGACTCGAATGTAAGGACAATAAAGTGGAACAAATAAGTGATTGCGTTAAAGATGACATTTTCAATTTATTTCTGAAGGATTCTTTGATGGAGACCGAAGCAATTATTCTAGATGGCACCGATAACAATAACGATTTTAATAGTATGGACCCCGATCCATTTCAAAATACACAAAAGCAAGAGAATACAAGAAAGCCAAGAGCACGAAGAGCTAAAGGGAAAAGCGATTCTCTTCCCAATAGTAAATCAAACTACCGCAAATCCAAAAAGTCAAATATGATGGGAGAAAATGAATCAACAAATAAAAAAATTGAAACCATAACGGCGTTACAGACTAAAAATAAAACAGAAAAATGTGCGGCGGAAGAGGGGGACAGTGATGAAAATTTCGATTGGCAGGAAAGTTCGTTCCAAGATCCAGGTGATGATTCGTCCGATAATGAAGTACTAAGTAATAAAATTCCACATTCCGAAAGATCAGATAAAGTAAGAAAACAAAAACCAAGAAAATGTAATGTTAAATTGAATGAAGAAAACTCATTTTCAAATCATGACTTTAGAGTCGAAACACAGGAAACAGAAGAGCACTCGAAGGACGAGTTGAAAGAAAATAAATCCACCAGTTCAACATCTACAAATAGCATAGAGTTTGAAAAACAGCCTTTAGGAATTATAAAAACTGAACTAGATTCCGATGGTGAAGCATCATCCGACAGTGATTTTAATACACAGGCAAATATACCGTCAAAGCCAACAAAGATAGAAAAGAAAAAACGACATTATATTTTAAACAGTGGTCGTAAGAAAGGTTTAGCCAATAGGTATAAGTGTGACCAATGTCAGCACAAGTTTGGTCATAAACTTACTCTGGAGGCACACGTCCGTAAAGTACATGAAGGTCAAAAAAAGGCTTTCAGATGCCAACTTTGCGATAAGGCGTACTCATTTGTGGGAGGATTGTCCACTCACATTAGAGACGTACATGAACGCAAACAAGACTCGTATGATTGCAGTGTACCGGGATGTGATAAAAAGTATAGCAACTTTATAACGCTACAACGTCATGTACGTTTTAAGCATCTCAATATGGAGTCGACGCATCAATACGTATGTGAACAGTGTGGAGCCACATTTAAACAAAGTTCAAATTTACGGTATCACATGAAAACTCGCCATCCAACTGAAGAGGATCTGAAGCGTAAAGAACTGCTGCCTAAAGATCGTTTGGAATGCGAGGAATGTAAAAAATCATTTCATTCTCAGTACACACTTAAGTATCACAAACTGCGAGTACATGCTGACGAGAAGAAATTCGAATGTAAAATATGTGGCCGTCGAGTGGCTAAACAATTCATGTTGGACTCCCACATGCTGGTGCACTCTGACCAGAAGTTGGCCTGCAAGTTCTGTGGTCGAGAGTTCGTTCGCAAATATCAGGTGGAAGCCCACATTAGAGCGGTTCATCAAAAACTAAAACCTTTCCAGTGCCCACATTGCAGTGAAAGCTTTGCCTCACGGAAAACATTACGCCATCACATATATATACACACTGGTGAAAAGCCCTACGTATGCGATATTTGCGGTCAGGCCTATCGGCAGCCAACATGTTTGAAAAATCATCGTAAAATTCATAATAAGCTTAGTGCAAATGATACGGCCACTGCTATAGCAGCTAATCGCAGTTTTATAAATAACTTTGTACAAAACAATGATGCATTGACGAATGGGGAGGAAAATTTAGTATTAAATTAA
Protein Sequence: MITLTKNNARERCRTCLCKLLKDEDNDENVDTYFSNKFVDINTNKQLQEMLEKYVSTECGVDLCNDQSYPQYLCLECLKHLQTFETFRNKAMDSAKKLYKVFSGNCKVPKIELNDDGLECKDNKVEQISDCVKDDIFNLFLKDSLMETEAIILDGTDNNNDFNSMDPDPFQNTQKQENTRKPRARRAKGKSDSLPNSKSNYRKSKKSNMMGENESTNKKIETITALQTKNKTEKCAAEEGDSDENFDWQESSFQDPGDDSSDNEVLSNKIPHSERSDKVRKQKPRKCNVKLNEENSFSNHDFRVETQETEEHSKDELKENKSTSSTSTNSIEFEKQPLGIIKTELDSDGEASSDSDFNTQANIPSKPTKIEKKKRHYILNSGRKKGLANRYKCDQCQHKFGHKLTLEAHVRKVHEGQKKAFRCQLCDKAYSFVGGLSTHIRDVHERKQDSYDCSVPGCDKKYSNFITLQRHVRFKHLNMESTHQYVCEQCGATFKQSSNLRYHMKTRHPTEEDLKRKELLPKDRLECEECKKSFHSQYTLKYHKLRVHADEKKFECKICGRRVAKQFMLDSHMLVHSDQKLACKFCGREFVRKYQVEAHIRAVHQKLKPFQCPHCSESFASRKTLRHHIYIHTGEKPYVCDICGQAYRQPTCLKNHRKIHNKLSANDTATAIAANRSFINNFVQNNDALTNGEENLVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00922299;
90% Identity: iTF_00259115;
80% Identity: -