Cvom004997.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000107.1:679802-690348[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.00091 0.044 14.5 4.0 1 23 101 124 101 124 0.95 2 33 0.00039 0.019 15.6 1.9 2 23 135 156 134 156 0.96 3 33 1.1 52 4.8 0.5 2 23 163 183 162 183 0.93 4 33 0.36 18 6.3 0.6 1 23 189 211 189 211 0.96 5 33 0.0011 0.056 14.1 1.6 3 23 219 239 217 239 0.97 6 33 0.0012 0.057 14.1 4.3 1 23 255 278 255 278 0.90 7 33 0.00024 0.012 16.2 0.4 2 23 289 310 288 310 0.97 8 33 0.0063 0.31 11.8 0.5 1 23 343 365 343 365 0.98 9 33 0.0011 0.054 14.2 2.2 1 23 543 565 543 565 0.99 10 33 0.0045 0.22 12.3 1.7 2 23 673 695 672 695 0.96 11 33 0.21 10 7.0 2.0 1 23 705 727 705 727 0.98 12 33 8.3 4.1e+02 2.0 0.1 2 23 734 754 733 754 0.90 13 33 0.002 0.097 13.4 0.9 1 23 760 782 760 782 0.98 14 33 4.8 2.3e+02 2.7 6.0 3 21 790 808 788 810 0.94 15 33 9.6 4.7e+02 1.8 0.8 1 13 813 825 813 827 0.90 16 33 0.13 6.3 7.7 0.4 1 23 909 932 909 932 0.96 17 33 0.012 0.59 10.9 3.6 1 23 942 964 942 964 0.98 18 33 1.1 55 4.7 0.0 1 23 970 992 970 992 0.91 19 33 0.73 36 5.3 0.1 1 21 999 1019 999 1021 0.91 20 33 0.013 0.64 10.8 7.8 3 23 1029 1049 1027 1049 0.98 21 33 0.005 0.24 12.1 4.2 1 23 1152 1175 1152 1175 0.96 22 33 0.0015 0.072 13.8 1.3 2 23 1186 1207 1185 1207 0.97 23 33 0.0016 0.081 13.6 0.7 1 23 1240 1262 1240 1262 0.97 24 33 0.00081 0.04 14.6 4.9 1 23 1268 1290 1268 1290 0.98 25 33 0.0011 0.052 14.2 0.2 2 23 1478 1500 1477 1500 0.95 26 33 0.072 3.5 8.5 0.7 2 23 1507 1528 1506 1528 0.96 27 33 0.00018 0.009 16.6 0.2 1 23 1558 1580 1558 1580 0.98 28 33 0.055 2.7 8.8 4.2 1 23 1586 1608 1586 1608 0.96 29 33 0.098 4.8 8.1 5.0 1 23 1759 1782 1759 1782 0.97 30 33 0.00069 0.034 14.8 6.9 1 23 1793 1815 1793 1815 0.98 31 33 6.6 3.2e+02 2.3 0.1 1 23 1821 1843 1821 1843 0.71 32 33 0.0006 0.03 15.0 0.2 1 23 1849 1871 1849 1871 0.96 33 33 0.028 1.4 9.8 2.1 3 23 1879 1899 1878 1899 0.98
Sequence Information
- Coding Sequence
- ATGGCTTTCTATATTGACTTTGCCACCTCAACACATAATTTTGAGGAACAAACTGAGAACGAATTGTTTGCGCTAACTACATTACAGCAAGAAAACAAAGAACATACAAAAACCATAGAAGTAGTTTGTATaagcgatgacaatataaatgaggatgaaaacactgatggcaatgatacttgttattctgtaagtgatgatgatgatgctgatgatgatgttgaagcaaatggcacagagattgaaaatattgctgatgacgaTAAAGCCAGCTGTAGTAGTAGTAGTAAAGCTAAAAATTTTCGATGTACACATTGCGGAAAATGCTTCCCATCTGATGTGGACCTACATGTTCACATAGGACGAAATCACTACGCTAGTAAAAACGCCCACATGCCGTTGCAATGCCACAAGTGCAATAAAGGTTTCAGAAGTGCCAATGGTTTAAAAGGACACTTAAAGCTGCATGAGGGCATCACCTATTTACAATGTCCCATATGCACTGAAAAATTAAAGAAGAAAAATTTTGCTACACATGTTCTGTTGCACGAAAGCGATACATGTTTCCCTTGCCAGGTGTGTGGCAAAATCCATAAATCCAGTGCAGAACGTTTGAAACACTGGGAGACCCATGCCCTAGACCAACCATATGGTTGTAATATCTGTTATAGACGCTACAAGAGGCAAAAATATCTCATAAAACATGTAAAATACCACAGAACAAATAATCGCAAAAGCAGACCAATTTACAAAAAGTTAAATCATGCCTGTGACTATTGCAATAGACATTTCAAAACTCCAAAAGACCTACAGCATCATGTGACCGAAGCACATGACACGAGTGATAAAGACGAGTTACCAATGAAATGTCCCGAGTGCAAGAAAGGTTTCAAAAGTGCAAATGGTTTAAGAGGACACTTGAAATTACATGGGGACAACATCTATACAAAATGTCCCTTGTGTAAGGTAAAAATTAATGAAAAAGATTTCGCCTCACATGTTGTGTTGCACGAAGAAGCTGAACATTTCCCTTGCCAGGTGTGTGGTCAAACATATAAGACAACTGAAGAACGTCTGACACACTGGCAGACTCATGCTGCAGAGCTACCATTTGGTTGTGATTTTTGTTATCGACGTTTTAAGATACTTCTTTTACTATCGGATCACTTAAAATGCCATCCTGCATATACCTGTTATTTGTGTGAGCAGAAATTCACAGCAACTGAAGCTGAACGACCGCCCCATGTTTGTGGCAAGTGTAAGGAATTGCCTAATGTAGAGGAACAAGTACAACGTTTAAGAACTGAGAATGCGGAAAACCAGTCAACTCTTAATACCAATGAGGACTCCAATACAACGGAAAATATGGAAGTAGGAACTGAAAACCAAGAGTTTGATTCAGACTCTAACACAAACGATGATGACTCAGATTTGGAATTTATTAATGAAACTGAAACCAGTAGTGGTATTAGTTCACACTATATAAAGGCAACTATAACCAAACCAAATAAACCCGATATTAAACATTACAAATGTGTACATTGCCGAAATATCTATAATTCTAAAGAGGCCATTACATTTCACTTGGCAAAAACCCATTGCAAGTACGATTACACTATTTATCGTTTTAAATGTGATCGTTGCATTAAAAGTTTCCGCAGTAAATCGGGTCTTGATATGCACCAAAAAACCCATGATAAAACTAAACAAAATCAGTGTTCGATTTCACTATCTTCAAATCCTTTAGAGGAACAATTTAATGAAGAATTTGTAGCCTTATCGCCAAAGCAGCCAGAAGCCGAAACTATTAAAACCATTGAAGTAGTTTATATAAACGATGAGATTATAAATGAGCAAGAAGACATACTTGATGTCAGTGATACTGCAGGTTCACCATCTGATGGTGATAGCTATGAAACTGATCAGCTATCAAATGAAACAGACACAGATGAAGACAACCAGGCCAGTGTTAGTAAAGTTACAAAGGAGAAAAAAGGCAGACTGGCATTACTTAATAAATGTCAATATTGCAAAAAATATGTAAGAACTAAAAACGGCCTAATTAAGCACATAATAAAAAGACATGATAAAAACTATTACCAGCAATTTCCCTATCAATGCCAAAAGTGTATTAAAGGTTTCAAAAGTAGAAATGGTTTGAAATTTCACCTAAAAATCCATGGTAGTTTGGTGTTTGTACAATGTCCCCTGTGTCCTGCTAATCTCCGTGACAACTATTTCGCTACACACATTATGACGCATGAAAGCGAGACGTGTTTTCCCTGTCAGGTTTGCGGCGAAATATTTAGCAGTCATGAGCAACGTTTGCAACATTGGAAAACACATGCCGTAGACCAGCCATTTGGTTGCAATATTTGTTTTCGGCGTTATAAGAAACATCAATATCTAGTAAAACACCTGAAATGCCACAAATCATACAAGTGTTATTTTTGTAAAGAGGAATTTAATTCACCGGTCGCTCAGCGGCCACCCTATGTTTGTCGAAACTGTGAAAAATTGCGACACATAAAGAAAAAAGTAAAATATCTACGATATAAGGAAGCGGAAGAGCCAACTGAAGACTCAAATAAAGCTGCCTCTACAGAAGCTAACTCAACTAAAGAGGACTCAAATTTAGAACCTCTTGATGACAATACGCCCAGCGGCAGTTTAAACTATACCACAGAAACCATAAATCATGCAACTAAAGGTGTTATGCTACAGTATAAATGTCTGGATTGCAAATATGCATCTGACACAAAAAAGGGCGTGCTCAAACACTTGGCCAAATGGCATCGCAAGTACAAGCAAACAAATTTGCCCTTTAAATGTGAGCTCTGCAATAGAAGTTTCCAAACTAAGCCGGGCCTAAACTGCCACCTCAAGACCCATGACAAAAACAATCAATTCCAGTGTCCCGTGTGTCCGCTAACCGTCTTCCGGGAAAGTATTTTCGTGGCTCATGTCATGTTGCACGAAGACGACGAGTCTTGCTTTCCCTGTCAGGTGTGCGCGAAAATATTTCCCTCAAATGCCGAAAGAGTGGCCCACTATCAACCGCATATCAAAGAACGGCCCTATGGTTGTGATATTTGCTATCGCCGTTTTTATCATCATCATTATCTAAGAAGTCACATGAAAACTCATGGGAATACCAACAAAACCTCTAATCCTTCAGAGAATCGTAACGAGGAATTTTTTGCCATAACCGCTGTCGGACAACAAACACAACAGCAAGATGATAAAGAACTCATACAAGTTATTTATGTAAACGATCAAAACGATCCGGCAATTGATAATATTGAAGAAGGCATTGATGCCATATCATGTTATGCTTCCAGCGATGAGGATGAGGAATATCTAACAGATTTTGAAAGTAACGATGGCCATGAAGCCGGCAGTAGCCATGCTAGACACATGAAAAGGGGAAAAACAACCGGCCTAGCTGAATTACACAAGTGTAACTCATGCGAACAAAGTTATAAAACTAGAAAAGGCTTGCGGCAACACATGTTTCGTATTCACTACAAAAACTACCACAAACAATTGCCACTGAAATGTGACAAATGCAATAGAGGCTTTAATACCAGAAGAGGCATACGCATACACTTAAAAACCCACGACGAAAAGAATCTTTTACAGTGCCCGGTCTGTTCGGCGAAGCATCAAAAGCATTATTTTATCAATCATGTGTTGACGCATGAAAGCGATAGCTGCTTTCCTTGTCAGGTCTGTGGCAAAGTGTACAACAGTCATGATGAACGCCTGAAACATTGGGAGACTCATGCTGCTGACAAACCATTTGTTTGTCAGTTTTGTAATCGCCGTTATACACAACAACAGTATTTAACACATCATTTGAAAATTCACTGTCAATATCAGTGTAATTTCTGTACGAATGAATTTAATTCGATCGAAACACAACGATCGCCCTATGTCTGTCCCAGCTGTGCAGAATTGCCGGAGGTAAAGCAGAAAATAGAGCAACTAAAATCGTTGGCGATGAAAAGTCATCATGTCTTGGAATCGGATGAGAACTCATATCCTGCTAAACAACAACCTACTGTAAAAACTAACGATGGATGTTTTACCATAACACCAATAGACAGCCAAGAAACACCACAACAATTAAGCATGGAACAAGATAATAAAGAAATAACTCCTCAAGTAGTTTATGTTAAGAATGAAGCTGATGAACAAAGTGAATATGATGACTCTAACTGCACAACCATTGAAATTAATAGGGAGACTAATATTGAAAATCCAGAAGAAGTTAATGATTCAGATACTTGTTATTCACCGAatgacgacgacgatgatgatgatgatacagatgtagaaagtaacgatgacaatgaagccagtggcagtaatagcaaaagaaaaagcaagagcaaaaaactgccggcagacctggacttatcaagcctcaaatgtccatattgtccggcagcatttaaaaataaaccaagcgccacacggcatctaatacgctaccatggcaaTAAACTACCGATAAAATGTGGAAAATGTCATCGGGGTTTCCTTAATGCAAATGGTTTAAAAGTCCATTTAAAAGCTCATGACCATTTTCAGTGTCCCATCTGTAAATCAGAGCATATAGAAAACTATTTCATTACGCATATCTTGATGCACGAAAGCGATACTTGCTTTCCGTGTCAGGTTTGTGGCAAGATATATAGCAGCCAAGCTGAACGTATGAGACACTGGAACACTCATGCTAAAGAGAAACCATTTGCTTGTAATATTTGTTTCCGGCGCTATGGTAAACTGCACTATCTAACGCGACATTTAAAATTCCACAATCAATATCATTGCAGTTTCTGTGCGATGGCATTCAATTCAATTGAGGCCTTACGAGCGCCCTATGTTTGTTCGAAATGTGAAAAATTGCCTGATATAAAGCAGAAAATTGAAAATCTAAAAATTTTCATGGATAACCGTGATGCGGATGAGAACACCACTACACCTTCAAATCTTGCTGAGGAATTTGTGGTACCTTATGAACTGCCATCAGCAACAACTGATCAAGAAATACCAGAAAAGAAGCCAAACTTTTTAGAAGAAGTCTCTATAAAAGATGAATTAAATACCAACAGAGACAGTACTTTTAACGAAGGCCACATAAAGATAGACCTGGAAGATGTTCATGATGATGATGATGGTGAACAAACAAATGCCGAAAACTCAGATTTAGAATTTATCGACAATACAGCAGCAATACCAACCCACATAGACACGGACACCACAGCACACAAATGCCAGCACTGTGAACGCGATTTTCACTCTAAACAGGGCTTAGATCTGCACATCAGACTAATTCATAACAGCACTAGCAACGAACCTGGTTCTAAACACAGATGTCTAGAGTGTAATAAAGATTTCCGCACCAGATCGACGCTGTGGCATCATAAGAAAACCCATGACAAAAGCAATCAATTTCAATGTCCTGTCTGTCCGACCAGAAAATTCGGCGAAGGTTCTTTCATTGTTCATGTCATGTTGCACGAAAACGAATCGTGCTTTCCGTGTCAGGTGTGTGGTAAGATATTTACCACCAACGAAGAACGTATGACACATTGGGAGAGTCACATTAAAGAACGGCCGCATGGCTGTAAAATTTGCTATAGACGGTTTGCCCAGAAGCATATTCTACAACGTCATCTGAAAGCCCACAGCCAATAA
- Protein Sequence
- MAFYIDFATSTHNFEEQTENELFALTTLQQENKEHTKTIEVVCISDDNINEDENTDGNDTCYSVSDDDDADDDVEANGTEIENIADDDKASCSSSSKAKNFRCTHCGKCFPSDVDLHVHIGRNHYASKNAHMPLQCHKCNKGFRSANGLKGHLKLHEGITYLQCPICTEKLKKKNFATHVLLHESDTCFPCQVCGKIHKSSAERLKHWETHALDQPYGCNICYRRYKRQKYLIKHVKYHRTNNRKSRPIYKKLNHACDYCNRHFKTPKDLQHHVTEAHDTSDKDELPMKCPECKKGFKSANGLRGHLKLHGDNIYTKCPLCKVKINEKDFASHVVLHEEAEHFPCQVCGQTYKTTEERLTHWQTHAAELPFGCDFCYRRFKILLLLSDHLKCHPAYTCYLCEQKFTATEAERPPHVCGKCKELPNVEEQVQRLRTENAENQSTLNTNEDSNTTENMEVGTENQEFDSDSNTNDDDSDLEFINETETSSGISSHYIKATITKPNKPDIKHYKCVHCRNIYNSKEAITFHLAKTHCKYDYTIYRFKCDRCIKSFRSKSGLDMHQKTHDKTKQNQCSISLSSNPLEEQFNEEFVALSPKQPEAETIKTIEVVYINDEIINEQEDILDVSDTAGSPSDGDSYETDQLSNETDTDEDNQASVSKVTKEKKGRLALLNKCQYCKKYVRTKNGLIKHIIKRHDKNYYQQFPYQCQKCIKGFKSRNGLKFHLKIHGSLVFVQCPLCPANLRDNYFATHIMTHESETCFPCQVCGEIFSSHEQRLQHWKTHAVDQPFGCNICFRRYKKHQYLVKHLKCHKSYKCYFCKEEFNSPVAQRPPYVCRNCEKLRHIKKKVKYLRYKEAEEPTEDSNKAASTEANSTKEDSNLEPLDDNTPSGSLNYTTETINHATKGVMLQYKCLDCKYASDTKKGVLKHLAKWHRKYKQTNLPFKCELCNRSFQTKPGLNCHLKTHDKNNQFQCPVCPLTVFRESIFVAHVMLHEDDESCFPCQVCAKIFPSNAERVAHYQPHIKERPYGCDICYRRFYHHHYLRSHMKTHGNTNKTSNPSENRNEEFFAITAVGQQTQQQDDKELIQVIYVNDQNDPAIDNIEEGIDAISCYASSDEDEEYLTDFESNDGHEAGSSHARHMKRGKTTGLAELHKCNSCEQSYKTRKGLRQHMFRIHYKNYHKQLPLKCDKCNRGFNTRRGIRIHLKTHDEKNLLQCPVCSAKHQKHYFINHVLTHESDSCFPCQVCGKVYNSHDERLKHWETHAADKPFVCQFCNRRYTQQQYLTHHLKIHCQYQCNFCTNEFNSIETQRSPYVCPSCAELPEVKQKIEQLKSLAMKSHHVLESDENSYPAKQQPTVKTNDGCFTITPIDSQETPQQLSMEQDNKEITPQVVYVKNEADEQSEYDDSNCTTIEINRETNIENPEEVNDSDTCYSPNDDDDDDDDTDVESNDDNEASGSNSKRKSKSKKLPADLDLSSLKCPYCPAAFKNKPSATRHLIRYHGNKLPIKCGKCHRGFLNANGLKVHLKAHDHFQCPICKSEHIENYFITHILMHESDTCFPCQVCGKIYSSQAERMRHWNTHAKEKPFACNICFRRYGKLHYLTRHLKFHNQYHCSFCAMAFNSIEALRAPYVCSKCEKLPDIKQKIENLKIFMDNRDADENTTTPSNLAEEFVVPYELPSATTDQEIPEKKPNFLEEVSIKDELNTNRDSTFNEGHIKIDLEDVHDDDDGEQTNAENSDLEFIDNTAAIPTHIDTDTTAHKCQHCERDFHSKQGLDLHIRLIHNSTSNEPGSKHRCLECNKDFRTRSTLWHHKKTHDKSNQFQCPVCPTRKFGEGSFIVHVMLHENESCFPCQVCGKIFTTNEERMTHWESHIKERPHGCKICYRRFAQKHILQRHLKAHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -