Basic Information

Insect: Calliphora vomitoria
Gene Symbol: ham
Assembly: GCA_942486075.2
Location: CALNXM020000204.1:620410-665924[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.048 2.3 9.0 0.0 2 21 295 314 294 317 0.87

2 9 0.12 6.1 7.7 4.6 1 23 324 347 324 347 0.92

3 9 2e-07 1e-05 25.9 3.3 1 23 353 375 353 376 0.96

4 9 2.4e-06 0.00012 22.6 1.7 1 23 382 404 382 404 0.95

5 9 2.9e-05 0.0014 19.2 4.9 1 23 410 432 410 432 0.99

6 9 0.00041 0.02 15.5 1.1 2 21 440 459 439 460 0.95

7 9 9.5e-09 4.7e-07 30.1 1.3 1 23 891 913 891 913 0.99

8 9 5e-07 2.5e-05 24.7 0.9 1 23 919 942 919 942 0.97

9 9 8.6e-05 0.0042 17.7 6.6 1 23 948 970 948 970 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.048	2.3	9.0	0.0	2	21	295	314	294	317	0.87
2	9	0.12	6.1	7.7	4.6	1	23	324	347	324	347	0.92
3	9	2e-07	1e-05	25.9	3.3	1	23	353	375	353	376	0.96
4	9	2.4e-06	0.00012	22.6	1.7	1	23	382	404	382	404	0.95
5	9	2.9e-05	0.0014	19.2	4.9	1	23	410	432	410	432	0.99
6	9	0.00041	0.02	15.5	1.1	2	21	440	459	439	460	0.95
7	9	9.5e-09	4.7e-07	30.1	1.3	1	23	891	913	891	913	0.99
8	9	5e-07	2.5e-05	24.7	0.9	1	23	919	942	919	942	0.97
9	9	8.6e-05	0.0042	17.7	6.6	1	23	948	970	948	970	0.98

Sequence Information

Coding Sequence: ATGATTTTCGATCGTTATGCTGCCTCAGGCAGCACAGGTGACGACTACGAATTCGGTGGTGCTTTCAAACAATATCCCAACAATCTGGCCTCCCCCGACTCCACCAACACCCTAAGATTAGCCACCAACACTAACGATCTTAACAACTACCAGCATAATACACATCAACACCACCACCACCAACACCAACGTCTTAACGGTTATAGTCAAAGTAATTCACCTAGTCGTTCGCTGGGCATCGATTCTACAACATTGGTTAATACCTTGCCCCACTCACCAGCCCACATGGAACATTTATTTAGTAGTAAACTACAAGCGGAACGGCTTCTGCTGGAGTTGACACATTTACAAGAACCTATCTGTGATTTGAAACAAAGTGAGAATGGCGGCGTTCTAGCCAAACAGCATTTGAGGAGGGGTACACGCTTTGGACCGTTTGCGATAACGGAGTCAACGGAAAAATCAAATGCCTGGGATATCTTACCCATGTCCCATATACGTAGCCTGTTGGAACCCTCACCCGAAGTTAAGTTGTTATTAAAGAAAATTCGTACTTCCTCCAATTTGGAGTGTGAAAAAGAGGCTAATTTTAATAATTTTTATGTGGCGGGATGTCTTTGGTATGAATCTAATCGTGATATTGAGGCTGGTGAAGAGATTATCATAGACGGCCGGCCCAAAACTCTCTACGAGCATAATGAGTTATTGGCGAATGGAGAAATGCACAATGGTTCCTCAATACATAGCAGTGATGATAGAAGTGAACGTGATAATGCCTCATTTTATGGATCAAATTTAAACCGTGAAGACGATTACAAAAAAGACAAGTCCTCCGATCAAATAAAAAGTGAAATAAGTGATGATGAAAACGGTTTTGATATACGCTGTGAAGTGTGCGATAAAGTCTTTATAGAATTAGAAGGTTTGGACGATCATTTGGTGGGTGCCCATCATTTTCGTAAAGACGAATTTTTCTGTGAATTGTGTTCACAGCGTTTCTGTCATCGACCGCTCTTACTGAAACATCGAGCTTTGCAGCACAACGAGATACGGAAATATCCCTGTGAAAATTGTACCAAGGTATTTTGTGATCCATCGAATTTACAGCGACATATTCGTAACCACCACATTGGAGCCAGAAGTCACGCTTGCCCTGAGTGCGGTAAAACGTTTGCTACCTCATCAGGTCTTAAACAACACACGCACATACACTCCTCCGTTAAACCGTTCCAGTGTGAGGTGTGTTTCAAAGCCTATACGCAGTTCTCGAATTTGTGCCGACACAGGCGCATGCATGCCGATTGTCGCATGCAGATAAAGTGCAGCAAGTGTGGTCAAAGTTTTAGTACGGTTACCTCTTTGTCCAAGCACAAAAGATTTTGTGATTCTACCAACGTACCACCGGCGGGAGTAGGTTTGCCACCCAGTTTAGCACACTCTTTGCACCATCAAACCCCCAACCAGTCTCCCACACAAACCAGATCTTCAGGGGTAAACGGTAATTTAGCCAACAACATGACTACACCACCGAATCCATTTTTGTTCTGGCGTTCCACCTTCTTTCCGGCATTTCCTCCGGCTGCTGCTGCCTTTGGTTTGCAGGGTATGTTTCCCCAGGCGCCCGCTACCCAAACCTCAAACTTTGCACCCATGTTCTCAAAACCCAATATGGACTTTAAGCTGCAACAGCTGAGATGCCAGCCCCCAGCAAATGCTCTCAACCACAACCTCAATAACACTAGTAATAAGACCAACTCCCTGGCCGTTAGTCCCGCCAAGGAGCACCTAAATACATCAGCAAATCAAGAAGCATTTGGTCTCTATTTTCCCAAATTTGAAATGGAGCAAAAGCTGAAACGTGAAAGAAATTCAGCTGATAGTATAAATCATGTAAAATATAAGAGAGAACAACAGCGTTTTTCTTCCGATGAAGAGTCCATGGAGACCAAAGAAAAAACTACCAAACAAAAAGAAACCGACCACAAATTGAAAAAAGAGGAGGAAGAAGAGGTCTCCTTAAGAATGAATGAGGATGATAAGAAATCTATTGATATTGTGTCAGTGTCTCCACATCACGAAGCTGAAGCTAAAACCGCTTATACAGAACTGCCTTTGGATCTTAGTGTCTCGCGCAAAAGAAGCAGTATTGACTCAAATTTCAGTCAACAGTCCGCTGAACAGAAATCTACACGAGCTGACAACAACAACTCCTCTATAATAAATATTCGAGATATCAGTCCCATAGCCCATGAAGAACTAAGCAATGCGGACAGTTATGAGCAGCCTACAAAAAAGCAAAGAATATTCAATTCCTCGGTAAACAGCAGTCGCACTCCCACGGCCTCACCGGGACCCACACCCTCTCCCTCACCACCCTGCAATGTAACCAGTACGGCAGTCCATGAAAATACTTCTGCCTCCCTGCCCACTTGTCCACGGCCCATACATCCCATGCTGCTGGATGAAATCTATCGCACACATGCATTGGAATCCACATTTCAGCGTCCGTTCCCTTTTTTAGGACTAATGGGCGAGCGGCCGTCTTTAGAGGCCAATGCATTACGCGCTAGAGAAGAACAGTTCGCAGCCGAACCCATGTTCCATGAAGCCTTGAGGGGCCTTTCTGCCGGTGCCCTACAAGTGGCCCAATCGGGCAAATTGAAAGATCGTTATACCTGCAAGTTCTGTGGCAAAGTTTTCCCCCGGTCGGCCAATCTAACCCGTCACTTGAGAACTCACACCGGCGAACAACCCTATACCTGTAAATATTGTGATCGTGCTTTTAGCATCTCCTCAAATCTGCAAAGACATGTACGCAATATACACAACAAAGAAAGACCTTTCAGATGCCACTTATGTGATCGTTGCTTTGGCCAGCAAACGAATTTGGATCGTCATCTGAAGAAACATGAATCGGACACCACCGGTCTGGGTTTGGCCATCAGTGATTCGCCCAGCTCGAATGAGGCCGATCGTGAGGACTCCTATTTCGATGAAATACGCAATTTCATGGATCGTGTCACCTACAATGAGGATCTGTATACACCCTCCAGCATAGGCAATGCGGAAAATGATACCGACTACAATGCCAGCGATAATGATAATGAGCTATCGGTTTCCCGGCCTTCATCGGCTGATTTAACTAATGATCATCCACCCAAAACTACTGAGGCTAATGAAATCTTAGAGGATGATTAA
Protein Sequence: MIFDRYAASGSTGDDYEFGGAFKQYPNNLASPDSTNTLRLATNTNDLNNYQHNTHQHHHHQHQRLNGYSQSNSPSRSLGIDSTTLVNTLPHSPAHMEHLFSSKLQAERLLLELTHLQEPICDLKQSENGGVLAKQHLRRGTRFGPFAITESTEKSNAWDILPMSHIRSLLEPSPEVKLLLKKIRTSSNLECEKEANFNNFYVAGCLWYESNRDIEAGEEIIIDGRPKTLYEHNELLANGEMHNGSSIHSSDDRSERDNASFYGSNLNREDDYKKDKSSDQIKSEISDDENGFDIRCEVCDKVFIELEGLDDHLVGAHHFRKDEFFCELCSQRFCHRPLLLKHRALQHNEIRKYPCENCTKVFCDPSNLQRHIRNHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHRRMHADCRMQIKCSKCGQSFSTVTSLSKHKRFCDSTNVPPAGVGLPPSLAHSLHHQTPNQSPTQTRSSGVNGNLANNMTTPPNPFLFWRSTFFPAFPPAAAAFGLQGMFPQAPATQTSNFAPMFSKPNMDFKLQQLRCQPPANALNHNLNNTSNKTNSLAVSPAKEHLNTSANQEAFGLYFPKFEMEQKLKRERNSADSINHVKYKREQQRFSSDEESMETKEKTTKQKETDHKLKKEEEEEVSLRMNEDDKKSIDIVSVSPHHEAEAKTAYTELPLDLSVSRKRSSIDSNFSQQSAEQKSTRADNNNSSIINIRDISPIAHEELSNADSYEQPTKKQRIFNSSVNSSRTPTASPGPTPSPSPPCNVTSTAVHENTSASLPTCPRPIHPMLLDEIYRTHALESTFQRPFPFLGLMGERPSLEANALRAREEQFAAEPMFHEALRGLSAGALQVAQSGKLKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHESDTTGLGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEDLYTPSSIGNAENDTDYNASDNDNELSVSRPSSADLTNDHPPKTTEANEILEDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01235976;
90% Identity: iTF_00259090;
80% Identity: -