Cvom016491.2
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000555.1:118169-120067[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.1e-05 0.0045 17.6 3.1 3 23 216 236 215 236 0.97 2 12 0.00012 0.0061 17.2 0.8 1 23 242 265 242 265 0.95 3 12 0.0023 0.11 13.2 0.2 1 23 277 299 277 299 0.97 4 12 0.0087 0.43 11.4 0.9 1 23 304 327 304 327 0.97 5 12 3e-05 0.0015 19.1 1.8 1 23 333 355 333 355 0.98 6 12 0.0098 0.48 11.2 0.2 2 23 362 383 361 383 0.97 7 12 3.8e-05 0.0019 18.8 1.8 1 23 389 411 389 411 0.95 8 12 0.00048 0.023 15.3 0.6 1 23 416 438 416 438 0.98 9 12 3.9e-06 0.00019 21.9 1.0 1 23 444 466 444 466 0.91 10 12 0.00028 0.014 16.0 4.6 1 23 472 494 472 494 0.98 11 12 1.2e-05 0.00058 20.4 1.2 1 23 500 522 500 522 0.97 12 12 0.00058 0.028 15.1 0.1 1 23 528 550 528 550 0.97
Sequence Information
- Coding Sequence
- ATGACTACAATTCTATTGGGTCGTGTATGTCGTACCTGTTTAAAAAAGTCCAACGATATGCATAAATTACGTGAGTTCATCGAAAATGATTTACAAATAGAAGATATGCTTAATCAATCCATACCCAATTTTGATCTAAAAATGGATGATGTACCTTTGCCGGTAGAGATATGTGAAGAGTGTTTTAGTATATTACAAAAAACTTATGATTTTGTACAAATGTGTTGGAAAAGCAACCAGGAATTGAAGAATATTTTGAATCAACAGGAGCAAGAAATTGAAGCATCGATGGTGGGGATCACAACAGATTTATATCCGAAGGATATTTTAGATGAAACTGATATACTACTGGATAATTTTAAAATAGAACATGATGACAACTCCATTTGTTCATCTCCAAAGGGACTTGTTAATGATGCTCAAGTTAAAAGAAAAGATTATCAGTTTGAGGGAGTTAAACTTGAAGTTGAAATGACAAATGAAAGTCAACATGAAGACTCTAGTAGCTCGGAGGATTACTGGCCTAATCATAATAAAGAGGATACCGAGAGCAATTCTTCTAAAAATATGTCAAAAGCTCTAGATATTAAGCCTAAAAGAAATGACGGTAGAAAATTAACTGTTAAACGTTCCAACACTAATATTTGCCTTCATTGTAATAAGGTCTTTACCAAAAAGAAATATTTAAGCAAACATTTGTTGGTGCATGATCCGGTCTATGAATTTGTATGTGACATTTGCAGCTATCGCTTCTCCAGCGAGAGAAAACTAAGAAATCACTTACAAGATGATCATACAGATGTACAAACATGTTTAGATGATGGTCCATACGCCTGCTCAGACTGTACCATGATTTTTCAACAGAAATTAGAATTGACTGTACATCGTGCTATGCATCGAGATAAGAAATTTAAATGTCAAGTGTGTAACATAAATCTGAAAACCTTGACTGACGTTAACACGCACATGAGTAGTAAACATCCAGATGTGTTGCCCTATAAATGTCATGTATGCGACAAGGCTTTTCGGATTGAAAATCAGCTTAAATATCACATTAACGAGCATATGGGTTATAAAAATCTTAAATGTGATTTATGTGAAAAGAGTTTTCTAAATATTACCGCTTTGAAGGATCATGAACGCATACATACTGGCGAGTTACCATTTTTATGTCCCCACTGTGGTAAATCTTTTAAAACATCCAATATTTTGCGTCTACATATATTAAGACATGGTGAGAAAAAATTCTCTTGTCTTGAATGTCCCATGAAATTTTATGCACAATCTAAACTTAACGAACATATGAGCTCACACACTAAGCTAAAACCTCATGCCTGTGATATATGTGGTAAAACTTTTACCAGACCGCAATCATTAAAAGCCCATAAGTTCGCGCATTCTGGGGAGAGACCTTTCAAATGTGAGGTTTGCAATATGAGCTTTGTTTTTAAACGCCACTGGAAAAGACATAAACTCACCCATTCGGGAGAAAAACCTCATATGTGTAAATTTTGTGATCGTGCTTATGCATCCAGTGGAGATTTGGTTAAACATTTGCGCACTCATGTGGGCGAAAAGACCTATTTTTGTGACCAGTGTCCGGAAGCATTTAAATATGCAATCGATCTTAAGGATCATAAACTAGTGCATTATAAGGAACAATTAAATTTACAACAAAATAATAATGAAACAGCCGAGCTATCAAATGAAACAGTAAATATACAGTAG
- Protein Sequence
- MTTILLGRVCRTCLKKSNDMHKLREFIENDLQIEDMLNQSIPNFDLKMDDVPLPVEICEECFSILQKTYDFVQMCWKSNQELKNILNQQEQEIEASMVGITTDLYPKDILDETDILLDNFKIEHDDNSICSSPKGLVNDAQVKRKDYQFEGVKLEVEMTNESQHEDSSSSEDYWPNHNKEDTESNSSKNMSKALDIKPKRNDGRKLTVKRSNTNICLHCNKVFTKKKYLSKHLLVHDPVYEFVCDICSYRFSSERKLRNHLQDDHTDVQTCLDDGPYACSDCTMIFQQKLELTVHRAMHRDKKFKCQVCNINLKTLTDVNTHMSSKHPDVLPYKCHVCDKAFRIENQLKYHINEHMGYKNLKCDLCEKSFLNITALKDHERIHTGELPFLCPHCGKSFKTSNILRLHILRHGEKKFSCLECPMKFYAQSKLNEHMSSHTKLKPHACDICGKTFTRPQSLKAHKFAHSGERPFKCEVCNMSFVFKRHWKRHKLTHSGEKPHMCKFCDRAYASSGDLVKHLRTHVGEKTYFCDQCPEAFKYAIDLKDHKLVHYKEQLNLQQNNNETAELSNETVNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00045496;
- 90% Identity
- iTF_00045496;
- 80% Identity
- -