Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.14 68 3.8 0.2 24 44 4 30 3 30 0.81

2 6 0.02 9.9 6.5 0.8 18 30 36 48 33 53 0.84

3 6 0.031 15 5.9 0.5 5 30 52 78 50 87 0.78

4 6 0.007 3.5 7.9 1.1 9 38 86 110 82 110 0.84

5 6 0.041 20 5.5 0.5 13 38 117 139 112 144 0.77

6 6 9.5e-05 0.047 13.9 3.1 13 44 145 173 138 173 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.14	68	3.8	0.2	24	44	4	30	3	30	0.81
2	6	0.02	9.9	6.5	0.8	18	30	36	48	33	53	0.84
3	6	0.031	15	5.9	0.5	5	30	52	78	50	87	0.78
4	6	0.007	3.5	7.9	1.1	9	38	86	110	82	110	0.84
5	6	0.041	20	5.5	0.5	13	38	117	139	112	144	0.77
6	6	9.5e-05	0.047	13.9	3.1	13	44	145	173	138	173	0.87

Coding Sequence: ATGATCGTTAAAGTGTTTTCAAGGAAGTATTTACGTAGGAGATGTGCAACTATATATCGTTTGCGTAATCACATTGCATCCGTACACAATAATATATACCACCATATTTGTGACATTTGTGGAAAGAAATTCAAATCAAAGACATCCTTCCAAAAGCACTACGACGAACATCAAGGCATTGTTGAACCACCCGCTCAATGTACAATCTGTGGTGCATGGTTGAAAAACCAACACAGCCTACGTGTACATCATCAAACACATGAAGACACACAGTTTGCCTGCGATATTTGTGGTAAATTCTTCAAGACTAAAAAGAATTTGAGTCGTCACAAAGGCTATTGGCATCGGCGAGAGCGCAATCTTTCGTGTAGCTATTGCGACAAAGTGTTTCGCGAAAAACGCAATCTTGACGAACACATGGCCATGCATACAGACACGAATCTGTATACATGTCCGCATTGTGGCAAAGAGTCAAGATCCAAATCAAATATGTATGTACATATAAAACGACAGCATCCAGATGAATGGTGGAAATCAAAACAGGAACGTTATAAATTAAAACCCGAAGAAGGTGGACAAGCAGGCGGCGAAGATGAGGTTAAAGAAAAGTCACCAGTAATAGACGCACCAGTATCATCAACTCTAGCACAGGAATGTATAAATACGGAATAA
Protein Sequence: MIVKVFSRKYLRRRCATIYRLRNHIASVHNNIYHHICDICGKKFKSKTSFQKHYDEHQGIVEPPAQCTICGAWLKNQHSLRVHHQTHEDTQFACDICGKFFKTKKNLSRHKGYWHRRERNLSCSYCDKVFREKRNLDEHMAMHTDTNLYTCPHCGKESRSKSNMYVHIKRQHPDEWWKSKQERYKLKPEEGGQAGGEDEVKEKSPVIDAPVSSTLAQECINTE

Sequence clustering based on sequence similarity using MMseqs2