Cvom004075.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000085.1:3314099-3317029[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.5e-06 0.0017 18.5 0.2 3 43 69 106 67 107 0.90
2 5 4.1e-08 2e-05 24.7 4.6 3 44 129 169 127 169 0.94
3 5 2.3e-10 1.1e-07 31.9 4.2 2 44 227 266 226 266 0.95
4 5 1.2e-11 5.8e-09 36.1 5.0 1 43 314 353 314 354 0.97
5 5 0.0006 0.3 11.4 0.1 3 43 385 423 383 430 0.93

Sequence Information

Coding Sequence
ATGGAAGAATATCAAATTCAGGACAACGGGGAAACATTGATTGAAACTGATTACGAAGTAAGTGAAATATTTGAAGGCAGCGCAGATTCGAATGACATTGAAGTGGTCGATTTTGAGACCTTTCAGCAGCAACAACCGGAAGATAGTTTAACTAGAAGCAATTCAAAGGATTGTTTATCAGCAAACAAACGTAAATATAGTTTCGTGTGGCAATATTTTGAACCCGTTGAGGGTACAAATCAGTTCCAGTGCCTGCTGTGCCAATCCTGTGTTGGCTGTCAAACTAGCAATTTAGCCAGACATTTAGCTTCTACACATGATATCACCAAGCAAAGAGACAAGCGTTTAGACAACTTAGTGCGAATACGTCCAAGTCGTAGTTTTATTTGGAAATATTGTACCAAGGAGGATTCCAAACACGCACGCTGTCACCTGTGCAACAAAGTTTTATACTTCGGAGGTGGTAATACAGCAAATATTACAAAGCATTTAAGGCGTCTGCATTCCGATTTAATTAAAGAGAATAAGAATCCACCAAATTCGTTAAAAATGGATGATGAAACTATGCAAGCTACAGCATCTCTGTCAAACACAACAACATATGACGATGATCACAACGAAGGCCGGTCCAGTGCCGACATAACATCGGCCGAACGTAAAGAGCGTCGCGGAGCCAGCTATGTTTGGAATTATGTTGAAAAGCTCTCACGCCATACAATACGTTGTAAACTCTGTACCAAAGTAATGTCCTTCCATGGCACCGCCAATGTTATAACCCATTTGCAGCGACGTCATAATGTACTCGGCGAACCAGGATCCCAGTTAAATCAAATGATCAATGCGAAACCAGAATCGTTGAGTGAGTTAGAAAACCACGATGATTACGAACATACAGAATATGGAGGAAAAAAATTTGGCCGAAAATCCCTGAGTACTGCCAGTGTAGTGTGGAAGTTTTGTACACGTATTAGTTCGGATCAAGTGAGGTGTTGTTTTTGTAAGAAAAATCTTTCTTACCAGGGTACTTCGAATTTACAACGTCACTTGCATCGTATGCATGGTGTCATAACACACGGGCGTCTTAGCAAGGCTACTGAAGATTTTGTTGCCATAAAGGAGGATAATTTTAAGGTGCCAGCGAATATTGACTTCATTTGGCAATTTTGTTCACAATTGGAAGACGATCAACGCACCAAGTGTAATATGTGCGATGCCCTGTTTGAGACAAAGGACACCGAGACAATAGTTAAACATTTGGCTATGGTGCATTCAGTGGAAACTAATCAAAGTTCTCATGGAGACCATAAACCAATTATAATGAGAACTAAAAAACGTCATAGACATGTTGATTTTGATACCGATGATGACGACGATTTTGATGGGAAATGGAGTAAAATTGTTGATGCTGACGACCAGCAAATGCCTACCGAATTTGATGAGTCAAATATTAAAAAGGATGATTCTTTGTACGATGATATTATAGAGGAAGACCCCAATAATTATGATGAGGAACCATTTGATCCGAGTTTAATGCAGGACTTGCCCCAAGCTAATCCTTTATCACCTCACTCATCACGTGCAGACTCTCCTCAACACCAACAAACAGCTATACAGTACCCAAATCAACAACAACCGCAGTCGCTGCAACCTACCAATCTGCTACCACCTTTGGATGCAAAAGTTCTTCTTAAACTTCAGGAAGATCGTTTGCGCATGGAAACGGACTATTTTCGCGAAAAAGCTGGTTACTATCGTATGCAAAAGTACTTGACTGCCTTACAAGCGAAAAAAGTACGCATTGAATTAGAACGAATAAATCGTGGCGAAGCGACAATCGTAGCAACAGCCGATTTAAATGGTGCCTATGCAGTCGAAGTTATACCAGAACATCATATAACAACACAACAGTAG
Protein Sequence
MEEYQIQDNGETLIETDYEVSEIFEGSADSNDIEVVDFETFQQQQPEDSLTRSNSKDCLSANKRKYSFVWQYFEPVEGTNQFQCLLCQSCVGCQTSNLARHLASTHDITKQRDKRLDNLVRIRPSRSFIWKYCTKEDSKHARCHLCNKVLYFGGGNTANITKHLRRLHSDLIKENKNPPNSLKMDDETMQATASLSNTTTYDDDHNEGRSSADITSAERKERRGASYVWNYVEKLSRHTIRCKLCTKVMSFHGTANVITHLQRRHNVLGEPGSQLNQMINAKPESLSELENHDDYEHTEYGGKKFGRKSLSTASVVWKFCTRISSDQVRCCFCKKNLSYQGTSNLQRHLHRMHGVITHGRLSKATEDFVAIKEDNFKVPANIDFIWQFCSQLEDDQRTKCNMCDALFETKDTETIVKHLAMVHSVETNQSSHGDHKPIIMRTKKRHRHVDFDTDDDDDFDGKWSKIVDADDQQMPTEFDESNIKKDDSLYDDIIEEDPNNYDEEPFDPSLMQDLPQANPLSPHSSRADSPQHQQTAIQYPNQQQPQSLQPTNLLPPLDAKVLLKLQEDRLRMETDYFREKAGYYRMQKYLTALQAKKVRIELERINRGEATIVATADLNGAYAVEVIPEHHITTQQ