Cvom004451.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- -
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000094.1:356801-357409[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-10 3.2e-07 30.2 0.0 4 40 18 53 17 57 0.94
Sequence Information
- Coding Sequence
- ATGCCAAAAAATAAAAATAATGGCCTCAAGCGGCCCATTATAAATATAACAAATATATCATCAGCCATAAAAGACATCGAACAAGGAATGACTATAGAAACAGCAGCCAAAAAGCATACAATTGCCAAAACAACCTTGTGGAGACATTACAAAAGACACCAACTGTCTGGCCAACAAACCTGTGTTTATGTGAACAGTCTTGAAAGCAATAGTAACAACAGGCAAATATTTACGGATGAGGAGGAAATCTTTCTGGCTGAATACATCAAAACACTAGCAAAATTGCAATATGAACTTGATGTAGACGATATTAAGAAATTTGTCTATCTCATTGCACAGAAAAATAACAAAATTATGCCAAAATCCTGGATAGAACATAAATTGGCGGACATTGAATGGTTGGAGGGATTTGTTAAACGACATCCGAGTACACCTCTGGGAAAGAGAAATGATCCGACAATTTTCCCTAACTACCAACCAAAAATTGATTTTAATGTAATTCCCAGTAATTTAAACGACTCAATATCACTATATCTCTTTACTCAAATTTATCATCTAATGAAGGTGACAAATACGGTTGCAGAAAAAAGTGCTAATGAAAATAAATAG
- Protein Sequence
- MPKNKNNGLKRPIINITNISSAIKDIEQGMTIETAAKKHTIAKTTLWRHYKRHQLSGQQTCVYVNSLESNSNNRQIFTDEEEIFLAEYIKTLAKLQYELDVDDIKKFVYLIAQKNNKIMPKSWIEHKLADIEWLEGFVKRHPSTPLGKRNDPTIFPNYQPKIDFNVIPSNLNDSISLYLFTQIYHLMKVTNTVAEKSANENK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258792; iTF_00199800;
- 90% Identity
- iTF_00258792;
- 80% Identity
- -