Cvom004636.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- ttk
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000098.1:295114-305114[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-19 5.2e-16 58.3 0.0 2 45 586 630 585 630 0.97 2 2 4.7 8.2e+03 -3.2 0.7 3 11 663 671 663 674 0.82
Sequence Information
- Coding Sequence
- ATGTCAGTGCAACAATTTTGTTTACGCTGGAATAATCATCAACCAAATTTCATTTCGGTCTGCTCGTCTCTACTACACAATGGTACATTGGTTGATGTTACACTGGCTGCTGAAGGGAGGCAATTGCAAGCTCACAAAATTGTTTTATCAGCATGCAGTTCATATTTCCAGaccctctttaccaccaatccctgtcaacatccgatcgttatattaaaagacgtgcaatatgatgatcttaaaacaatggttgattttatgtattatggagaggtgaatgtgtcgcaagagcaattgccgcacatactgaagacggcagaaatgcttaaaataaaaggtctcgccgaaatgcCCACCGATCCTGCCAATTTAACCAAATCTGACAGTAAATCATCAAATGATGCTACAGAGTTggtgggtagcggtggtaataatggacagttaggtggcggcggcggcggtggtaataatagtggtggcggcagcagtgctggtggtggaaatacaagtagtggtggtttgggcagcagtagtggtggtggcagtgtcagcgattcaatatggggtagtactgaatcacaatttcaacagcaacagcagcaacaacaacagcaacaacaacatcaacagcatcatcaacagttacaacagcagcagcaacaacaacagcaacaccatcatcaacaacaacagcagcagcaacagttacacacccaactgcaaaatagtcaaacacaaacctcacaacaacagcaacaacaacagcagcagcaacaacaacatcatcaacaacaattacgacgtacaccgtctccgttaggcgctggcgcctcaccagctaccagACGAAAACGTTTAAGAAAATCCTCAAATAATGGATCCGGTGAACGTACTAATTCCGAAGATCATAACACTTCTTTGGATGCAGCCACAGCAGGTGGCCTAACCTTGTCCCAAATGAGTCAAATGTCATTTGGTGGTGCAGCTACAAATAGTGCTCTCGGTGGTTTAGCCGCACACTCCTTGCACACAGCTAAATTACTTAAAGAAGCTTCTAATAATGATTTGGAAACAAATCCCCAAGATTCAGATAGTTTAGATGATACCCATGGACATGTACATATGCAAATTAAACCCGAAGTTGATATGAGCGGAGTGCCACAGTCTATGCCATTGGATATATCGGGTGCCACAACGCCCTCTGAACATGATGCTCCAAATTCACAATCCGCACATTCAGGTTTACAATGGACGGTTGTTGAACCAAATTATTCACGCTTTTcgctgtcatcctgtcccaccaatttaattggcaataacaacaatcaaaatacaaataccaacaataacaacagttcgagtagtgatcaacagcaacaacatcagcagcaccgtcaacagcaagaagccgttgctagtcaacagcatcagcaacaacaacaacagcagcagcaacaacacttgcagcaactacaacaatatcagcatcaacaaaacgctgcgtattcgccacaaatcataacggtcagtggctatacgaatgcagcagctgctgctgttgcggcggcccaaaACCTGTCACCGCCCTCGCCCAACGACGGCAATATGGTGCAATCAGTATACAGCCAAGGACCAACGCCCACCCAATCACCGGTGGGAAATACCCCGGGCTCTGTTGGTGGCAACAACATGTCCGGCGGCAACTCAACCAACAATGCCATCATAAAACGTAAGCGTTCGGTTAATCCACAAGGTGATGAAAATTTTATACGGGCCCTGGAGGCAGTGCGTTCGGGAGGTATAGGTTTCTGTAAAGCAGCACGACTGTATGGCGTTAATAACCGCACTTTATGGCTAGAGTACAAGAAGCGCGGTTATCCTGTGTCCAGGCCTAGTATAAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCCTCCCCCACACCACCCGGCAATGCCACAGACGATACCAATGAGAACTACGATCATATGGCAGCAGCAGTGGCAGCTGCACAAACGGCCGCCCTAAACATGCAAATACCACCGACTTCCGAAACACCCACACCCTCACTAATGTGTACACCCCATCATGCTGGCACAGCCGCTGGTGCTACCACACATCCCACAATGGGTGTAATGAGTTTCTTGGATACCCGCCATATGGACTTCCCAGCCAGTCTGCATTCAATGTCGCGTCAACGTTACATTGATGCCGGCGCTGGCAGTGGGGCCGGTGCGGGCACCATCAATGTTAATCCGGCAACGGCAATGAATCTACAGAGTATTAATTTTAACTCGATATAG
- Protein Sequence
- MSVQQFCLRWNNHQPNFISVCSSLLHNGTLVDVTLAAEGRQLQAHKIVLSACSSYFQTLFTTNPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMPTDPANLTKSDSKSSNDATELVGSGGNNGQLGGGGGGGNNSGGGSSAGGGNTSSGGLGSSSGGGSVSDSIWGSTESQFQQQQQQQQQQQQHQQHHQQLQQQQQQQQQHHHQQQQQQQQLHTQLQNSQTQTSQQQQQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGERTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAATNSALGGLAAHSLHTAKLLKEASNNDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGATTPSEHDAPNSQSAHSGLQWTVVEPNYSRFSLSSCPTNLIGNNNNQNTNTNNNNSSSSDQQQQHQQHRQQQEAVASQQHQQQQQQQQQQHLQQLQQYQHQQNAAYSPQIITVSGYTNAAAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPTQSPVGNTPGSVGGNNMSGGNSTNNAIIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPGNATDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHSMSRQRYIDAGAGSGAGAGTINVNPATAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- iTF_00259853;