Cvom011059.1
Basic Information
- Insect
- Calliphora vomitoria
- Gene Symbol
- retn
- Assembly
- GCA_942486075.2
- Location
- CALNXM020000275.1:124921-152887[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-26 6.6e-23 81.1 0.0 2 89 20 105 19 105 0.96 2 2 1.7 5e+03 -1.8 0.3 9 29 247 267 237 286 0.59
Sequence Information
- Coding Sequence
- ATGTTGATTTCCGAGGATCAAATTCAAGAGTTGTACGAGATCAATGATGATCCGAAGCGTAAAGAGTTCCTTGATGATCTGTTTTCATTTATGCAAAAAAGAGGCACACCCATCAATCGTTTACCAATAATGGCGAAATCCGTGTTGGATCTTTATGAACTGTATAATTTAGTGATTGCTCGTGGAGGTCTTGTCGATGTTATTAACAAAAAGCTGTGGCAGGAAATCATAAAGGGACTTCATCTGCCATCGAGTATAACAAGTGCAGCGTTCACACTACGTACACAATATATGAAATATTTGTATCCATATGAATGCGAGAAGAAGAATCTAAGTACGCCAGCAGAATTACAGGCTGCAATTGATGGTAACCGTCGGGAAGGACGTCGTTCCAGTTACGGTCAATATGAGGCAATGCACAATCAAATGCAAATGCCTCAAATGGCTCGCCAATCTTTGCCAGGCGGCATGCAACAGATGTCTCCGTTAGCTTTGGTAACACATGCGGCTAACAACCAACAAGCACAGGCAGCAGTAGCTGCTGCAGCTGCACACCACAGACTGATGGCTCCCTCGTTTGGTCAAGTTCCGAATTTGGTAACACAGGAAATTGAGCAGCGTATGATCGAGTATTTGAAACTAATTCAAGTTAAGAAGGAACAAAATGCCATGAGCAATGGTGCTGGCCCGATGGGTCTTTCGCCGCACCACCAGCATCATCAGCAGCAACAGCAACAGCAGCAACAACAACACCAACAGCAGCAGCGTCAGAGATCTCAAAGTCCTGAGATAAATACAAGAGAAGCCTTGAATGCGTTGGAAATGTCACGTGTGGCATTGTGGCAAATGTACCATAACAACACCAGCCCACCAGCTTCTGTCAACACCTCACCACAAGGTGGTGGCAACGTAAATAGTGGTGGAAGTCATGATGTTGGTAGCGAAGCACAACGTAGCGAGGCTTTAAACCTCTCAGATTCACCACCAAATCTCACCTCCATAAAGCGTGAGCGAGAGCGCGAACCCAGCCCGGAAATGAATGAACACAATGATTTTCACCACCAACCTCCTCCAGCTAAACGTGCCGGATTTCCTGCCAGTTTCTATTTACCACCCGGCATGAGTGACATGGCTGCTGCTGCCGCAGCTGCCAACTTTCACTACAAAGGTGGCCAGCACGATTCCGATGCTGAGGCAGACGAAGAAAACGACGATGACGGATGCGACCATAATACAACAGCAAATTCCTCGCACGATGACCCCAACGAACGCCAACATTTGAATGGCAGTTCGCTGCGAGCACCTCGACATCATGGCAGTAACAGCAGTGTCCACAATGACAAGTCTGACGATTCGGCCATTGAAAATTCCCCTTCCACCTCAGCGGCATCGGCCGGCAATGGTCACATTTCACCCATATCTACTAAGAAAATTCACTTGTCAAAGCAGACTCAACAGCACCACAACACAGCAACGGTCAACACTAACACCGCTAACAATATGACGACGGGTAACTCTACCGCGCTGGATCCATTCGAGGCTTTGAACTTGCTCTCTGGTATGCAATTTCGTCTAACACGAAAAGGTACTAATTCCGACGGCGAACAAGAGTTAGTAGTTAACCTTGAACTAAACGGCATTAAATACTCTGGTATACTTATTTCAAACACCTCAAAACTGGCAACATCAATAGCGACGACATCAACCGAAACAACGACGTCGACGACAGCGATGTCGTCTATCAGCAACAACAAAAATGTCAACAATTCCAACAAAACCGATAACAATATTGCAAACATTAGCCGTAAGAACGGCACACACAGCCACACTCCCACCAACATCATTAACAATACCAATGAATCAGGCAAGGATTTAGTCGTTGCCATGGATGCAGTGGAAGATACAAGTGCATTGACAATGCGTGATACTGAAACACCACCAAACACATCCATGACAGCAACACCAGCAATAGCAACGAATCAAACAAATGCTGTCATAGCAAATGGTCCCAACAGTAGCACTAACCCACTCAATGATGCCCTAATAACATCATAG
- Protein Sequence
- MLISEDQIQELYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMQMPQMARQSLPGGMQQMSPLALVTHAANNQQAQAAVAAAAAHHRLMAPSFGQVPNLVTQEIEQRMIEYLKLIQVKKEQNAMSNGAGPMGLSPHHQHHQQQQQQQQQQHQQQQRQRSQSPEINTREALNALEMSRVALWQMYHNNTSPPASVNTSPQGGGNVNSGGSHDVGSEAQRSEALNLSDSPPNLTSIKREREREPSPEMNEHNDFHHQPPPAKRAGFPASFYLPPGMSDMAAAAAAANFHYKGGQHDSDAEADEENDDDGCDHNTTANSSHDDPNERQHLNGSSLRAPRHHGSNSSVHNDKSDDSAIENSPSTSAASAGNGHISPISTKKIHLSKQTQQHHNTATVNTNTANNMTTGNSTALDPFEALNLLSGMQFRLTRKGTNSDGEQELVVNLELNGIKYSGILISNTSKLATSIATTSTETTTSTTAMSSISNNKNVNNSNKTDNNIANISRKNGTHSHTPTNIINNTNESGKDLVVAMDAVEDTSALTMRDTETPPNTSMTATPAIATNQTNAVIANGPNSSTNPLNDALITS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01260775;
- 90% Identity
- -
- 80% Identity
- -