Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288235.1:37004313-37007263[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.4 3.9e+02 2.8 0.0 2 23 221 242 220 242 0.93

2 11 7.8 6.8e+02 2.0 0.3 1 22 283 304 283 306 0.76

3 11 0.42 37 6.0 3.4 1 20 347 366 347 373 0.90

4 11 0.18 16 7.2 1.4 3 23 407 426 405 426 0.95

5 11 0.0047 0.41 12.2 5.2 1 23 442 464 442 465 0.93

6 11 0.00086 0.076 14.5 0.3 1 23 473 496 473 496 0.96

7 11 0.0002 0.018 16.4 0.3 2 23 502 523 502 523 0.97

8 11 1.7e-06 0.00015 22.9 0.4 2 23 529 550 528 550 0.97

9 11 0.0062 0.54 11.8 2.2 1 23 556 578 556 578 0.98

10 11 0.0025 0.22 13.0 3.1 1 23 583 605 583 605 0.94

11 11 0.43 38 6.0 4.6 1 23 610 634 610 635 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.4	3.9e+02	2.8	0.0	2	23	221	242	220	242	0.93
2	11	7.8	6.8e+02	2.0	0.3	1	22	283	304	283	306	0.76
3	11	0.42	37	6.0	3.4	1	20	347	366	347	373	0.90
4	11	0.18	16	7.2	1.4	3	23	407	426	405	426	0.95
5	11	0.0047	0.41	12.2	5.2	1	23	442	464	442	465	0.93
6	11	0.00086	0.076	14.5	0.3	1	23	473	496	473	496	0.96
7	11	0.0002	0.018	16.4	0.3	2	23	502	523	502	523	0.97
8	11	1.7e-06	0.00015	22.9	0.4	2	23	529	550	528	550	0.97
9	11	0.0062	0.54	11.8	2.2	1	23	556	578	556	578	0.98
10	11	0.0025	0.22	13.0	3.1	1	23	583	605	583	605	0.94
11	11	0.43	38	6.0	4.6	1	23	610	634	610	635	0.96

Sequence Information

Coding Sequence: atgaaaCAACGATGTCGTTGTTGTTTAATAACAAATTCCAATGCGTACTATGACATTTTCGAACATCATAAATCGGGGACCACCTACGCCGAGAACATACGCTTTTTAGCTGAAGTGCAAATTGACCACGACGATGGTTTACCCCAACAAATATGTTCCAATTGTTATGATGAAGTACAGCGTATATATGACTTCGGTTTGAATGTACGCCTAGCCGATGAAAAGTTGAGACAGGAATTGGAAGCCACTAAAAATCAAATTGAAGATGAAGACCAAATGGAAAATGTACAAGTCTTAGAAAATGAATACTTTGCCCCAGTAGACGACAATGGCATGCAAGTGTGTGTAATGGAGGAAATACTCGAACATGAAACCGAACAAGAAAATGTACTGATAGTAGAGgaaattcatGATGTCGAAGAAATAAATATGGTAGAAGATATGATAGACTTGGCAAAAGATCTACAAACTAAATCCTACAATCAAAAGGAAAATTTGTTAGTAGGTTTAGCTCAGGTGGCAGCAACTCaggaaaatgttaatattaatgaTAATCAAAGTGCTGACGAAGACGCCTACTTCCCAGAAGATGAGAACGATGAAGACTATCTGATAGAATTTGATGCAAATgaagtaaataattttgtacCTTCAAAATGGAAATGTGGTGAATGTAAAGTGATATTACGCGGAGATGTATCCTATGAGGGTCATATGAATATACATAGGCAAATACGACCGCATAAGTGTGTCCAGTGTCAAACTGAGTATAGATGTCGCACAGCTCTTAAACGGCACAAAGAGTTTAGGCATAGCTTGCCAATTCAGAATACAActaaaaaaacttacatatgCATGGATTGTAACAACAATTTCTACTCTGAAAATATATTCTATCTACATCAAGCTATTGTCCATGATCAAGGTGATAAATGTCCATTTCAATGTGATACTGCTAATGTGAACAATATAAAGGAACATATAGAAAGCCTTCATCCAAAAGAACTAAATACTTTAGCACTTGACGATACAACAACATATCAATGCTTTAGATGTtctaaaacatttgaaaatatcaGTCTTTTAGAATGTCACGCTAAAACGTGCGAAAGAATGTATGATGAACCACAGTTACATGATGACAATTTGGTTATGGAAAATAGAAATATCATAGAAATCATAAAAGTGGAGGGGGGCACTTCGGATATTTCGGTAAACTGCAATATTTGtcgaaaaaaattacttaagaaAAACTTGAATAAGCATTTGGAACTACATAAACGTAAAGAAGAGGAAAACAAAGTGGTGGATGATACGAAGCCATACCTGTGTTCATTTTGCCCTCGTGagtttaaaaattccaaatatctACATCAGCACGAAAAAGTCCATCATGCCGAAAGCTCAGATATAGTTTACGTATGCACAGACTGTGAGCGTCAATATGCTTCGCAATATTTACTGGATGTACATCGTAAACAAGCGCATAAAGAACGCGACAATGTCTGTAATATATGTGGAAATGCGTTCAAATTGAGAAATCAACTAGTGAATCATATGAAATTGCATTTGGAGAAGAATATACCGTGTCCACATTGTGATAAGAAATATGCCAGACCATTTGATTTAAATGTACATCTTAGATCGCATACGGGTGAACAACCATATGCCTGTCATTTGTGTGAGAAACGTTTTGCCATCAAAGTGCGCCTTACCTATCATCTGCAAAAACACTATGGCATCAAGCACTACTGTAAGGAATGTGGAGCCGAATTTAATtcgaaacagaaattaaaaGCACATTCGTTTAAACACACGGGTATGCCCTATCGTTGTCAGCTGTGTGATGATCATGGTTTTGCTACACGGAATacttttaaacgcCATTTAACTCGTGTGCATCATGCTTCTATATCAGAGGAAGCACTAAACGAAATGTTTCAAAAGAACACTGGCAAAAGTGTAAATATTAAGCAGATCGATGAGCAAAATCTTGTAGTGAGTATCAGTGAAGATGACCAACAAGAAGAGATAGAAGTACTGGGaaaataa
Protein Sequence: MKQRCRCCLITNSNAYYDIFEHHKSGTTYAENIRFLAEVQIDHDDGLPQQICSNCYDEVQRIYDFGLNVRLADEKLRQELEATKNQIEDEDQMENVQVLENEYFAPVDDNGMQVCVMEEILEHETEQENVLIVEEIHDVEEINMVEDMIDLAKDLQTKSYNQKENLLVGLAQVAATQENVNINDNQSADEDAYFPEDENDEDYLIEFDANEVNNFVPSKWKCGECKVILRGDVSYEGHMNIHRQIRPHKCVQCQTEYRCRTALKRHKEFRHSLPIQNTTKKTYICMDCNNNFYSENIFYLHQAIVHDQGDKCPFQCDTANVNNIKEHIESLHPKELNTLALDDTTTYQCFRCSKTFENISLLECHAKTCERMYDEPQLHDDNLVMENRNIIEIIKVEGGTSDISVNCNICRKKLLKKNLNKHLELHKRKEEENKVVDDTKPYLCSFCPREFKNSKYLHQHEKVHHAESSDIVYVCTDCERQYASQYLLDVHRKQAHKERDNVCNICGNAFKLRNQLVNHMKLHLEKNIPCPHCDKKYARPFDLNVHLRSHTGEQPYACHLCEKRFAIKVRLTYHLQKHYGIKHYCKECGAEFNSKQKLKAHSFKHTGMPYRCQLCDDHGFATRNTFKRHLTRVHHASISEEALNEMFQKNTGKSVNIKQIDEQNLVVSISEDDQQEEIEVLGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00200333;
90% Identity: iTF_00045698;
80% Identity: -