Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288236.1:3568571-3573760[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0019 0.16 13.4 1.0 1 23 120 142 120 142 0.98

2 15 8 7e+02 2.0 4.3 1 23 148 171 148 171 0.94

3 15 6.4e-07 5.6e-05 24.3 0.9 3 23 385 405 383 405 0.97

4 15 0.071 6.2 8.4 1.0 1 23 456 479 456 479 0.96

5 15 5.3 4.6e+02 2.5 2.8 2 23 544 565 543 565 0.93

6 15 0.0081 0.71 11.4 2.6 2 23 742 763 741 763 0.96

7 15 0.18 16 7.1 3.2 1 23 769 792 769 792 0.96

8 15 1.4 1.2e+02 4.4 0.7 1 23 829 852 829 852 0.95

9 15 0.044 3.8 9.1 0.4 1 23 866 889 866 889 0.97

10 15 1.6 1.4e+02 4.2 2.8 1 21 1048 1068 1048 1069 0.93

11 15 0.084 7.4 8.2 8.9 1 23 1086 1108 1086 1108 0.98

12 15 0.00044 0.038 15.4 0.5 1 23 1113 1135 1113 1135 0.94

13 15 0.0033 0.29 12.6 7.4 1 23 1141 1164 1141 1164 0.94

14 15 0.0015 0.13 13.7 0.4 2 22 1170 1192 1169 1193 0.87

15 15 1.6 1.4e+02 4.2 4.2 1 19 1199 1217 1199 1222 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0019	0.16	13.4	1.0	1	23	120	142	120	142	0.98
2	15	8	7e+02	2.0	4.3	1	23	148	171	148	171	0.94
3	15	6.4e-07	5.6e-05	24.3	0.9	3	23	385	405	383	405	0.97
4	15	0.071	6.2	8.4	1.0	1	23	456	479	456	479	0.96
5	15	5.3	4.6e+02	2.5	2.8	2	23	544	565	543	565	0.93
6	15	0.0081	0.71	11.4	2.6	2	23	742	763	741	763	0.96
7	15	0.18	16	7.1	3.2	1	23	769	792	769	792	0.96
8	15	1.4	1.2e+02	4.4	0.7	1	23	829	852	829	852	0.95
9	15	0.044	3.8	9.1	0.4	1	23	866	889	866	889	0.97
10	15	1.6	1.4e+02	4.2	2.8	1	21	1048	1068	1048	1069	0.93
11	15	0.084	7.4	8.2	8.9	1	23	1086	1108	1086	1108	0.98
12	15	0.00044	0.038	15.4	0.5	1	23	1113	1135	1113	1135	0.94
13	15	0.0033	0.29	12.6	7.4	1	23	1141	1164	1141	1164	0.94
14	15	0.0015	0.13	13.7	0.4	2	22	1170	1192	1169	1193	0.87
15	15	1.6	1.4e+02	4.2	4.2	1	19	1199	1217	1199	1222	0.90

Sequence Information

Coding Sequence: ATGGGCGACAAGAAATTCGTACAGGATTACACCATGGTGTGTCGGACATGTCTGCAATCAAATGTGGAAATGCTAAATTTAAGCGCGCTTATCAATGATAATGTACAGgaggaaaattcgaaaatatcaTATATGGAATGCTTGCAAATGTGCATACAAGTCGAGGAGGCGGTGGACATTGAGATGCCACACAATATTTGTTTAGAATGTGCGTCTGCCTTGCAAGTAGCTTACTGGTTCATGAAAAATGCTAGCCAAGCCCAGGagttgttgaaattaaaattgagagAAATTAAacgtaaaaaacaacaaattatggTGGagatggCGGCGGAGGAAGTAAGAAAACCTAAAAGATATCGTTGCAAAATTTGCAATGTAAAGGTGGAAACAAAGAGATCTCTTAAAGACCATGTTAAACTACATTTAGATATTATTATATATAGCTGTCAAATATGTTCCTTTGAAAGTCACAATCGAAACAGTTTATGTGACCATTATATACAAATGCATGGTATAGAAGCCTCAAAGGAACAATTGAAACCAAAAACAAAGATATCTACGACGTCCTTTTCATCACCCGCCACGATAACATCCCAGGATCAAACAATGGGAGCCATAACTAatgaacattttcaaatattgccCGAAGATACAACAGAACAAACATCATACGAGACATTTACCACAAATACAGTTTGCAGTAGTGGACCTCTCCAAGTGTCTACGATTATAACAACAGCACATCCCAATTACAGCACAATAACTGCACCATTCACGGCCTTGGAGGGTGATATAAATAGTGTTTCAACTAATGATCTAAGCATGGCTAATGAATTTATGGTTATGGCTGATGGCAGTTTAGAAAAAGTCATTAACAAAGGGGTTGTTATAGAGTATATAAATGCACCTCATAATACGAGCAATATTACTTTGGATAATGACATTATTTTAGACAATATAATACAGTTGCAGAATATAGATAACTCGGTCATGCTGGAACCGCAAAATAATATTGTGCAAATGGATGTTGATGATATGATTATAGAAGATCAAGGCGATGTAATAGAAGAAACACAAGaacCCATCCCTCCCCCTCTTGAAGAGGAAATAATACCAGTTACGATTATTGAGCAGCCtaagaaaattatttgtaaaatttgtacCAAAGATTTCACGACacaagaaaatttaaagaatcaTATGCTAACACACAATGAAATTCCCCACTTCTTTTGTGATCAatgtaaattttatacattttttaaaatcgatttaCATCAACACTATAAAAGTAAACATAATTTACAACCGACCAACAAACAGTTACAAcccaaaaacaaacaaagagCCGCTAATGAGTTATATGCCTGTGatttgtgtttttatgagtCCGAGACAAAGTCGGATATAAAAAGACATTACAAAGTTAAACATAATATAGAAGCCAACGAAATACATTTAAAGCCGACAAAAGTACCAACATTGAATTCCAAATTGTCTCCGCTCTCGGCCAAGGCAAAGGCAGCCGCTATTGTAAGCaatgcaacaacagcagcagcagcatcatctaaaaatgttaaaatatgttCTATCGAACAAACAACACCAGATTATCCAAATGGCTTAAATTGTCGCAAGTGCCATGAAGTGTTCTATTGGCGCAATAAACTGTACGAACATTATAAGTTGCATAATGCCGAAGAAGCGGCTCTCAAGCAAGAGAAACAGATTGTAAAGGTTCAAAACAAACCAACTTCAAATCTATATCAAAACAAGGCGAAAAACTCTAAGACGCCGTCAGTTCAAACAATTATACATGCTCAGTTGGAAACAACGAACTCACCTAACTATTCTAGCTTAGATTCGTTGACGGCCTTAAATGTCACAACACCAAACAATACGACACACAATTTAATAGCTCCGTTGACACCATCCTCCAGTTCGACCTACACTTTACCCTCGGATGCCATACCACAAATTGTGGAAACCGAACAAACTATTGAAAATGACATGGACTTTGATTTTAATGGCGACGATGATGCCTTGTTCGGTGACTTTGATGACGATGTTGATGTAGAAAACGATTCCGATGACAATGATACTGAATTTCGTAATGTGTTGTTAACGTCGGATGATGATTTCGATGACCTTTTACAGGAACAAAATAGTCTGAATAATGCTACCGGGGAGGCGGCGACAACGGCAACCACACGTGAATCTTATTGTGCCCATTGTCAGAAGTCTTTCTTAAGTCAATATCAATTTGAAAATCATATGTTTGTTCATAGAGGGCTGGCTCCTTATCGCTGTGAAATGTGCACAAATCTCTACAACACCAAACGTTGTTTGATACGCCACTACAAAGCTGTACATAAAAGTGTACCTACCCGAGATATGATCCAAGCCAAAGGTGATAAAGTGTGTGAAGATAAAACTCCAGTGGAACATTTAAAACTAGAAGAAACAACTTCATTTGCAGCTCATATGTGTGCTAAATGTCCTTATGAATCTTCAGAACTAAGCGATATTAAATATCATCTCAATTCTAGTCATAATATAAGTGATGaatCCTATATAATGAAAAAACTTCCTTATGAGTGCCCGCGTTGTATACGATCATTTGCAAGTAATGTGAAAATTCTAAGGCATTTACAACGTAATCATAGTTCGACCCCAATTAATCAGCATCAAATACGTTTCGAAAGTGCAGACAATGCATCCTCGTCAATGGCAATAGCAACAAGCACATCCGCAACATCAATTACAACAACACTAAATAACCATGTAAATATGATGAATACAGAAACTAGTGAAACAAACGCAAGTTGCGGATACAATGATATATTCACTAAACAAGAACAAGGACAACATCAatgtcaacaacaacaacaacagtactCTTATCCAGACTCAACCAGAAAAAAACTGTCAATTGAAGATGCCGTAGCACCCAATGTTATTATGGCCCGCTTCCCAGAATCTACCAGTTCAACAACATCTTTGGCTTATAATGAAACCATTACCAGCATCAGCGATAACTGCCCCATTACCAACATGCCTTCCAGCTCAACAAACTTTACCGCTGACTCGATCGCACCAACCGCCCTAGACGAAGCTGAGCTTGACCAACAACccctttttaaatgtaaaatatgcCTTTTGACCTGTTACAATCTCGAATcatttaatgaacatagcaaaCGTATTGACTGtcgtaaatttagttttaatagtCCCGGCGACCGAATGTTATTCGAGTGCGAAATATGTCATTGCTATTATAAAACcatgtatttattaaaacatcATCTCAAACGACACATAGGCAGGAAATTTCTCTGTGCCAATTGTCCTAAAACGTTTATAAACAAAGTGGAATTGGAGGCCCACAAACATGTGCACAGCGGAGAGCGGCCACATAAATGTGATGTGTGTACAAAATCGTTCCGTTATGTCCACCATTTGAAACGTCACAAGGACAGCGTTCACTTTGGCAAACGTCACGCTTGTACCGTACCCAATTGTGGTCGAAAATTTACAACACTAGCTCAATTGAAGGTGCACATATGGACTCACAATGGCATTGTGCCCTACAAGTGTCCATTTTGTAATCGTTTATTTAAAAAGAGATTGCTTCTACGTGGACATTGTTTTAAAGTCCATAAAGTCAATTTGAGTGAAGAGGAAATGGCTGAAATATTCCGCAATAGTTTGGGCTATACAAATCCTCATGATTTTACTGTGACCATTGGCAATGGTAAAATGTTACGTCGTGGTGATTTAGAAACAATGGGTGCTTCTGGCGTTATCAAATCTtcatttaaatag
Protein Sequence: MGDKKFVQDYTMVCRTCLQSNVEMLNLSALINDNVQEENSKISYMECLQMCIQVEEAVDIEMPHNICLECASALQVAYWFMKNASQAQELLKLKLREIKRKKQQIMVEMAAEEVRKPKRYRCKICNVKVETKRSLKDHVKLHLDIIIYSCQICSFESHNRNSLCDHYIQMHGIEASKEQLKPKTKISTTSFSSPATITSQDQTMGAITNEHFQILPEDTTEQTSYETFTTNTVCSSGPLQVSTIITTAHPNYSTITAPFTALEGDINSVSTNDLSMANEFMVMADGSLEKVINKGVVIEYINAPHNTSNITLDNDIILDNIIQLQNIDNSVMLEPQNNIVQMDVDDMIIEDQGDVIEETQEPIPPPLEEEIIPVTIIEQPKKIICKICTKDFTTQENLKNHMLTHNEIPHFFCDQCKFYTFFKIDLHQHYKSKHNLQPTNKQLQPKNKQRAANELYACDLCFYESETKSDIKRHYKVKHNIEANEIHLKPTKVPTLNSKLSPLSAKAKAAAIVSNATTAAAASSKNVKICSIEQTTPDYPNGLNCRKCHEVFYWRNKLYEHYKLHNAEEAALKQEKQIVKVQNKPTSNLYQNKAKNSKTPSVQTIIHAQLETTNSPNYSSLDSLTALNVTTPNNTTHNLIAPLTPSSSSTYTLPSDAIPQIVETEQTIENDMDFDFNGDDDALFGDFDDDVDVENDSDDNDTEFRNVLLTSDDDFDDLLQEQNSLNNATGEAATTATTRESYCAHCQKSFLSQYQFENHMFVHRGLAPYRCEMCTNLYNTKRCLIRHYKAVHKSVPTRDMIQAKGDKVCEDKTPVEHLKLEETTSFAAHMCAKCPYESSELSDIKYHLNSSHNISDESYIMKKLPYECPRCIRSFASNVKILRHLQRNHSSTPINQHQIRFESADNASSSMAIATSTSATSITTTLNNHVNMMNTETSETNASCGYNDIFTKQEQGQHQCQQQQQQYSYPDSTRKKLSIEDAVAPNVIMARFPESTSSTTSLAYNETITSISDNCPITNMPSSSTNFTADSIAPTALDEAELDQQPLFKCKICLLTCYNLESFNEHSKRIDCRKFSFNSPGDRMLFECEICHCYYKTMYLLKHHLKRHIGRKFLCANCPKTFINKVELEAHKHVHSGERPHKCDVCTKSFRYVHHLKRHKDSVHFGKRHACTVPNCGRKFTTLAQLKVHIWTHNGIVPYKCPFCNRLFKKRLLLRGHCFKVHKVNLSEEEMAEIFRNSLGYTNPHDFTVTIGNGKMLRRGDLETMGASGVIKSSFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00045734;
90% Identity: iTF_00045734;
80% Identity: -