Cvic022654.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vicina
Gene Symbol
-
Assembly
GCA_958450345.1
Location
OY288235.1:51988579-51991142[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.00026 0.022 16.1 0.9 1 23 383 406 383 406 0.96
2 5 0.00043 0.037 15.4 2.7 1 23 416 438 416 438 0.97
3 5 4.9e-06 0.00043 21.5 2.1 1 23 704 726 704 726 0.97
4 5 6.1e-06 0.00054 21.2 0.2 1 23 732 754 732 754 0.98
5 5 2.8e-05 0.0024 19.2 4.2 1 23 760 782 760 782 0.98

Sequence Information

Coding Sequence
ATGGCCACCAGATGTCCAACGCCGTTTGCTTTTCCCTTTACACCCCTGGGTTTGAGTTTATTTGATATTGATCCGTCCAGAATATTAACAATGTTGCATCATCAAACTTGGTTAGCAGAGGAAGCTTTAAGaAATCGCGGTTTGCTAACACCTCCACCCACATCGAAGGATTTTAGCCAACGTTTTAATCCTTTAAGCGATTTACTTTCCAAAGATTATCATGCCAATCATATGCATCTTAACACTGCCGATTTATTAGCTagatcatcattatcatcagcaGCCTTAGCTGCATCATCAGCCTCAGCCGCCCATTTTGGGGGTCCTACGGATTTAgctaacaaacaacaacaacaaacacagcAACACCGTTCCACACCACAGCAACAGCAGTACAAACAACAGCAACCACCTTTTAATATACGTTATCCGTCACCAGCTGCATTTTTTCAtcagcaacatcaacaacaacaactgcagCAACAATTACAaacacaaaaactaaacaaGTCAACTAGACAAAGCACACCCTCACCCCAACAAACTGCCACCTCCAGCGGTCCATCTCTGTTGAGTGGTTCTTCTTCAACATCGCTATCATCTCTGCACAAAAGCTCCGAACGCTCATTGACCCCGTGTCACAAGGACGACGACAATGATGCTGTTATCGAATTGACGACCAGCCATCATGATGAAGCAGCTGCTATAAGAGATCGTGATAGTGGCAATTCAAGTGCCGCCACTACCAGTTCCATTACCTCATCGATGCTTTATAAAGATTCCTTAGAACAACTATTACAACGCCGTCATTCCAGTGGAATGTTGACGGGTGAATCGAGTTTAAAGTCGTATTCACAGCTTTTATTGAATTCAACCACCCCAACTGATACCTCAAGTTGCAAGGAGAAAAGCTCCTCTTCATCTACCTCATCTACGCCACCACCGGCTCCGGGCACACCAGGTCAACTGTCGCTCAGCCGCAGCAGTCTGTTGAAAAGTCCCTCGGATACCTCATCACTGTTCAGTGAACCCATTGAGGAGGAGACCCGCTGCATAGTGTGCAATGCTCAGTTTCCCAATGTTTGGCTGCTGGAACAACATGCCGCTCTGCAGCATCCCCTTTTGGGACCAGGTGAGGAAAAACCTTTTATTTGTGAACAATGTGGTCAATCCTATCGATATCGTTCAGCTTATGCCAAACACAAAGAAACCAATCATCGGGCCCGTTTACCAGCCGACAAACTTTTTACATGTGACGTTTGTGGCATGCAATTTCGCTATTTGAAATCCTTCAAAAAGCACAGATTGAATCATGCCTTAGAACGTTTACATGGCAAAAAGGGCAAGAATCCGTTTGCCGCGCACTTGCAACAACAGATGCAGGAACACGAAATGGTGTCCAGTTCTCAGGAACCCAATATGATGATGGCTGATACTGAGACTGTCGAGGATTTGCGTATCAACATTAAGAAGGAGAGAGACGAAGaggaacagcagcagcagctgcaTCAACAAAAACATGATGAGGATCAAGATGCCACCGTAGATTCCGCTGGTTTAATGAGTTACCAAGATAACCCGGCCTCAAGCAACCTAACAATGCagaccaacaacaacaacaacaatgagcCTAACATAAGCAGCTCTGAAGGAATATATAGTACAAATAAGAGGACTCGTCTTCTTCAAGCTTCTCTGGAATCGGATTCCCCCTATCACTCAAAtcatcaacaacagcaacatgcACCACCACAACATCACCCACATACTTTGGTACATCACCCACACTTAACACCTCAACTGCCTGGGCATTTGGCTCACAATATGTCGGCTATGGCGGCTGCTGCAGCCGCAGCAGCTACCACACCCCAGCATCAGCAACAAATGACACCTCAAACAGCACAGCAAGCGGCAGTAGCAGCTGCAGCAGCCGCTGCTAATTCCATGAATTCTTTAAATTCTCTCAACTCTATAACATCGCTTATCAATGCTGAACGTTTGCCCAACGAACAATTTCTGGGACTAAATCCACAAGAAGCCTCTATACTCAATTTCCTAAGAGTGGATGCTCAGGAAAGGCAAAGAGACAAAAGaCCTCCAGCCTCCCGTTTTGCTTGCCCGTTCTGTGGCAAATGTGTACGTTCtaaggaaaatttaaaactacatgTGCGCAAACATACCGGCGAACGTCCCTTTGTTTGCCTCTTCTGTGGCCGCGCTTTCGGTGGCAAATCCGATCTGACACGTCACTTGCGCATACACACCGGCGAGAGACCGTATCATTGCGAATCGTGTGGCAAATGTTTTGCCCGAGCCGATTACCTCTCCAAACATCTAACTACACACATTCACAATGCTCCACGCTGA
Protein Sequence
MATRCPTPFAFPFTPLGLSLFDIDPSRILTMLHHQTWLAEEALRNRGLLTPPPTSKDFSQRFNPLSDLLSKDYHANHMHLNTADLLARSSLSSAALAASSASAAHFGGPTDLANKQQQQTQQHRSTPQQQQYKQQQPPFNIRYPSPAAFFHQQHQQQQLQQQLQTQKLNKSTRQSTPSPQQTATSSGPSLLSGSSSTSLSSLHKSSERSLTPCHKDDDNDAVIELTTSHHDEAAAIRDRDSGNSSAATTSSITSSMLYKDSLEQLLQRRHSSGMLTGESSLKSYSQLLLNSTTPTDTSSCKEKSSSSSTSSTPPPAPGTPGQLSLSRSSLLKSPSDTSSLFSEPIEEETRCIVCNAQFPNVWLLEQHAALQHPLLGPGEEKPFICEQCGQSYRYRSAYAKHKETNHRARLPADKLFTCDVCGMQFRYLKSFKKHRLNHALERLHGKKGKNPFAAHLQQQMQEHEMVSSSQEPNMMMADTETVEDLRINIKKERDEEEQQQQLHQQKHDEDQDATVDSAGLMSYQDNPASSNLTMQTNNNNNNEPNISSSEGIYSTNKRTRLLQASLESDSPYHSNHQQQQHAPPQHHPHTLVHHPHLTPQLPGHLAHNMSAMAAAAAAAATTPQHQQQMTPQTAQQAAVAAAAAAANSMNSLNSLNSITSLINAERLPNEQFLGLNPQEASILNFLRVDAQERQRDKRPPASRFACPFCGKCVRSKENLKLHVRKHTGERPFVCLFCGRAFGGKSDLTRHLRIHTGERPYHCESCGKCFARADYLSKHLTTHIHNAPR