Cvic026082.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- -
- Assembly
- GCA_958450345.1
- Location
- OY288235.1:114544008-114547581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0087 0.76 11.3 2.5 2 23 106 128 105 128 0.93 2 15 0.0013 0.11 13.9 0.9 2 23 139 160 138 160 0.97 3 15 0.00029 0.025 16.0 0.7 1 23 193 215 193 215 0.97 4 15 9.6e-05 0.0083 17.5 6.4 1 23 221 243 221 243 0.98 5 15 3.8 3.3e+02 3.0 1.2 1 14 246 259 246 262 0.86 6 15 0.00083 0.072 14.5 0.1 2 23 420 442 419 442 0.95 7 15 0.042 3.6 9.2 0.2 2 23 449 470 448 470 0.96 8 15 0.0011 0.094 14.2 0.1 1 23 500 522 500 522 0.98 9 15 0.41 36 6.0 5.7 1 21 528 548 528 550 0.94 10 15 8.2 7.2e+02 1.9 0.1 1 17 553 569 553 570 0.87 11 15 0.051 4.4 8.9 5.4 1 23 712 735 712 735 0.97 12 15 0.00058 0.051 15.0 9.3 1 23 746 768 746 768 0.98 13 15 2.6 2.3e+02 3.5 0.1 1 23 774 796 774 796 0.71 14 15 0.0001 0.009 17.4 0.7 1 23 802 824 802 824 0.98 15 15 0.0013 0.11 14.0 1.8 3 23 832 852 831 852 0.98
Sequence Information
- Coding Sequence
- ATGCAAGGAAATACCACCAAAACCTCAAATCCTTCAGAGAATCGTAATGAGGAATTTTTTGCCATAACCGCAGTCGGACAACAAACCCAACAGCAAGATGATAAAGAAGTCATACAGGTTATTTATGTAAACGATCAAAACGATCCCGCAATTGATAATATTGAAGAAGGCATTGATACCATATCGTGTTATGCTTCCAGCGATGAGGATGAGGAATTTCTAACAGATTTAGAAAGTAACGATGGCCATAAAGCCGGCAGTAGCCAGGCTAGACCCGCTAAAAGGGGAAACGCAACCGGCCAAGCAGAATTACTCAAGTGTAATTCTTGCGAACAAagttataaaactaaaaaaggcTTGCGACAGCACAAGTTTCGTATTCACTACAAAAACTGCCACAAACAATTGCCACTGAAATGTGGCCAATGTAATAGAGGCTTTAATACCAGAAGAGGCATACGCATACATTTAAAAACCCACGACGAAAAGAATCTTTTACAGTGCCCGGTCTGTTCGTCTAAGCATCAAAAACATTATTTCATCAATCATGTGTTGACGCATGAAAGCGATAGCTGCTTTCCTTGTCAGGTCTGTGGCAAAGTGTACAGCAGTCATGATGAACGCCTCAAACATTGGGAGACTCATGCCGCAGACCAACCATTTGTTTGTCAGTTTTGTAATCGCCGTTATAAACAGCAACAATATTTGACACATCATATGAAAACACACTGTCAATATCAGTGTCATTTCTGTACGAATGAATTTAATTCGTCGGAGACACAACGATCGCCCTATGTCTGTCCCAGCTGTACGGAATTGCCGGAGGTAAAGCAGAAAATAGAGCAACTAAAATCGTTGGCGAAGAAAAGTCATCATGTATTGGAATCGGATGAGAACTCATATCCTGCAACACAATCATGTTTTACCGTAACACCAATAGACAGCCAAGAAACACCACAACAATTAAGCAGGGAACAATCTCCTCAAGTGTTTTATGTTAAGAATGAAGCTGATGAAAAAAATGAATATGATGACTCCAACTGCACAACCATTGAAATTAATACAAAGACTAATATTGAAAATCCAGCAGAACTTAATGATTCAGATACTTGTTATTCACCAAATGACGATGACGACgacgacgacgatgatgatACAGATTTAGCAAGTAACGATGACAATGAAGCCAGTGGCAGTAAGAGCAAAAGAAAAAGCATAAGCAAATCACTGCCGCCGGATCTTGACTTATCCAGCCTTAAATGTCCATATTGTCCGGcagcatttaaaaataaaccaagCGCTACGCGCCATGTAATACGCTATCATGGCAATAAACTACCCATCAAATGTGGCAAATGTCAGCGGGGTTTCCTTAATGCAAATGGTTTAAAAGTTCATTTAAAAGCTCATGACCATTTTCAGTGTCCCATCTGTAAATCAGAACACATAGAAAACTATTTCATTACACATATCTTGACGCACGAAAGCGATACTTGCTTTCCGTGTCAGGTTTGTGGCAAGATATATAGCGGCCAAGCTGAACGTATGCGGCACTGGATAACTCATGCTAAAGAGAAACCATTTGCTTGTAATATTTGTTTCCGGCGCTATGGTAAACTGCACTATCTAACGCGACATTTAAAATGTCACAATCAATATCATTGCAGTTTCTGTGCGACAGCATTCAATTCAATTGAGGCCTTACGAGCGCCCTATGTTTGTACGAAATGTGAAAAATTGCCCGATATAAAGCAGAAaattgaaaatctaaaaatattcatGGATAGCAGTGATGTTGTAGCCCATGATATGGATGAGAACACCATTACACCTTCAAATGCTGCTGAGGAATTTGTGGTCCCTTATGAATTGCCAACAGCAGCTATTGATCAAGAAATACCAGAAATTAAGCCAAACTTTGTAgaagaaatttctataaaaaatgaattaaataccATTAAAGACAGTACTTTAAACGATGACCTCAAGAAAGACTCAAATACCGCTTGGTCTGGTTCTGAGCTAAATATTAAGATAGACCTGGAAGATGCTCAAGATGATGAAAACTCAGATTTGGAAATTATCGATAATACAGCAGCCATACCAATCCACATAGATACGGACACCACAGCACACAAATGTCAGCACTGTGAACGTGATTTTCATTCTAAACAGGGCTTAGATCTGCACATCAGACAAATTCATAACACAACCAGCAGCCAAGTTGGTTCTAAACACAAATGTCTAGAGTGTCATAAAGAATTCCGCACCAGATCAACGCTGTGGCATCACAAGAAAACCCATGACAAAAGCAATCAATTTCAATGTCCTGTCTGTCCGACCAGAAAATTCGGCGAAGGCTCTTTCATTGTTCATGTCATGTTGCACGAAAACGAATCGTGCTTTCCGTGTCAGGTGTGTGGTAAGATATTTACCACCAACAAAGAACGTATGACACATTGGAAGAGTCACATTAAGGAGCGACCGCATGGCTGTACAATTTGTTATAGACGTTTTGCCCAGAAACATGTTCTGCAACGTCATCTGAAAGCCCACAGCCAATAA
- Protein Sequence
- MQGNTTKTSNPSENRNEEFFAITAVGQQTQQQDDKEVIQVIYVNDQNDPAIDNIEEGIDTISCYASSDEDEEFLTDLESNDGHKAGSSQARPAKRGNATGQAELLKCNSCEQSYKTKKGLRQHKFRIHYKNCHKQLPLKCGQCNRGFNTRRGIRIHLKTHDEKNLLQCPVCSSKHQKHYFINHVLTHESDSCFPCQVCGKVYSSHDERLKHWETHAADQPFVCQFCNRRYKQQQYLTHHMKTHCQYQCHFCTNEFNSSETQRSPYVCPSCTELPEVKQKIEQLKSLAKKSHHVLESDENSYPATQSCFTVTPIDSQETPQQLSREQSPQVFYVKNEADEKNEYDDSNCTTIEINTKTNIENPAELNDSDTCYSPNDDDDDDDDDDTDLASNDDNEASGSKSKRKSISKSLPPDLDLSSLKCPYCPAAFKNKPSATRHVIRYHGNKLPIKCGKCQRGFLNANGLKVHLKAHDHFQCPICKSEHIENYFITHILTHESDTCFPCQVCGKIYSGQAERMRHWITHAKEKPFACNICFRRYGKLHYLTRHLKCHNQYHCSFCATAFNSIEALRAPYVCTKCEKLPDIKQKIENLKIFMDSSDVVAHDMDENTITPSNAAEEFVVPYELPTAAIDQEIPEIKPNFVEEISIKNELNTIKDSTLNDDLKKDSNTAWSGSELNIKIDLEDAQDDENSDLEIIDNTAAIPIHIDTDTTAHKCQHCERDFHSKQGLDLHIRQIHNTTSSQVGSKHKCLECHKEFRTRSTLWHHKKTHDKSNQFQCPVCPTRKFGEGSFIVHVMLHENESCFPCQVCGKIFTTNKERMTHWKSHIKERPHGCTICYRRFAQKHVLQRHLKAHSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -