Basic Information

Insect: Calliphora vicina
Gene Symbol: -
Assembly: GCA_958450345.1
Location: OY288236.1:60015771-60017699[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2 1.7e+02 3.9 0.5 3 23 283 304 281 304 0.92

2 10 0.18 16 7.1 1.3 6 23 313 330 313 330 0.98

3 10 0.015 1.4 10.5 5.2 1 23 336 358 336 358 0.97

4 10 3.7e-06 0.00032 21.9 0.1 2 23 366 387 365 387 0.97

5 10 0.00021 0.018 16.4 0.6 1 23 393 416 393 416 0.92

6 10 0.041 3.6 9.2 0.5 3 23 424 444 422 444 0.96

7 10 0.005 0.43 12.1 0.3 2 23 452 474 451 474 0.95

8 10 5e-05 0.0043 18.4 2.4 1 23 482 505 482 505 0.97

9 10 1.3e-06 0.00011 23.4 0.4 1 23 511 533 511 533 0.99

10 10 0.00025 0.022 16.1 0.5 1 23 539 562 539 562 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2	1.7e+02	3.9	0.5	3	23	283	304	281	304	0.92
2	10	0.18	16	7.1	1.3	6	23	313	330	313	330	0.98
3	10	0.015	1.4	10.5	5.2	1	23	336	358	336	358	0.97
4	10	3.7e-06	0.00032	21.9	0.1	2	23	366	387	365	387	0.97
5	10	0.00021	0.018	16.4	0.6	1	23	393	416	393	416	0.92
6	10	0.041	3.6	9.2	0.5	3	23	424	444	422	444	0.96
7	10	0.005	0.43	12.1	0.3	2	23	452	474	451	474	0.95
8	10	5e-05	0.0043	18.4	2.4	1	23	482	505	482	505	0.97
9	10	1.3e-06	0.00011	23.4	0.4	1	23	511	533	511	533	0.99
10	10	0.00025	0.022	16.1	0.5	1	23	539	562	539	562	0.97

Sequence Information

Coding Sequence: atggATTTTTGTCTACTTTGTCTAGAAACTAATAAAAGCATTGATGGTTGCATAGAGGTAAATTCTGAAAAATGGAACTATCAAAATATGAAAGTTTTGATTGATAAACATTTATGGCCAATGGAACTAAAATCCTCTTCATGGATTTGTAAAGCATGTGGAGCAGAATTATATGAATTTCATAAGTTTTACAAACGGATAGAGGTAGCGCAACTAAAGTTTGGGGCGGTATTAAAAAATGAGAATGTAACGACAGAATTAAATCAAAAAGACTTTATAGATAGTGATAGTAGTCAAAATCCAGAAGATTGTAAGGATAATCTATTTGCAGAAAGTCATCTTGAGCCACACATCGTTATGGAAGAACCTTTACCAACAGAGTTCATAATTGATGGACCATTTATTAAAAGCGAAAAAATTGAGGAGATAGGTCAACAGGATATTGTGGTCAAACAAAATAGGAAAAGAGGCAGGCCAGCAAAGGAAATGTCTCATGACAGAACTGAAATTAAGGAAGATCCGCTAAAGAAAACTAAAAGGcgtatatcaaaaatatcaagcactaaaaagataaaaagtgaccaaaaattacaaattgcATTTGAATCTGATACTTCTGAAGAAAATCAGATTGATCCCCATATACAAACGGATAATCTAGATGATGTAAAAAGCTCACCAACATTTAGAGATAAAAAAGAGAACAACGACTCAGAAACAGATCCGGAAAACTGCGAGGAAAAGCAAACTTTAACAGAAactgtaaaaaagaaaaatcaccGAAATTTGGATGAGAAAACACTTAAGGAATATGATAAGATTATAgcggacaattttaaaattttctgtaatatttGCCAAAGTGCATTAGATAACTTTTTATCTCTGCGCAGACATTTCAAGTTGGAGCACAAACAACGTGGCTATGCCCGCTGTTGTAAGAGAAATTTCTTTACACGATCTCTGTTGGTGGACCACATACATGTGCACTTAAATCCCGAATATTTTAAATGTCTTCAGTGTAGTAAAGTATTTTCCGACCGCAGTCGTTTGCAATGCCACAAAAGATTACATGATGATGATAGTAAACTGGATAAGTGTGATATATGTGGTAAATTGTTTGCAGATAAAGGTGCTTTAAAAAAGCATGTGTTGACGCACTCCTCCGAGAAATTGTTTCCTTGTTCAATATGTGGTAAATTctTCACCAACTCCTTCATATTAAACCACCACATTGAAGCAGTACATCAAAATAAATTCGTACAAATCTGTGATATTTGCGGTAAATCTATACGTTGTCCCACCGCATTTGCCAGTCATATGGAAAAACATGAAGTGAAATCCACCCCCATTAGTTGTGATGTTTGTGGTCTTTTGCTTTCCAACAAAGAGGGTCTAAAACGTCATAAAAATTCACAACACCCAGAAGGTGGCAAAAAAGAACATACATGCCATATCTGTTCAAAAGTATCGCCAACACAAAGGGCTCTTAAATCGCATATACGTTCCGTGCACGAACAGGGTTTCGATTACAAATGTAGTTTGTGTGAAAAGTCATTTAAACGGCCGGCCGTTCTGAGGGAACATATGGCTACTCATACGGGTACGGCTTTATATACATGTCTTTGGTGCCCCCGAACATTTATATCAAATGGCAATATGTATAATCATCGTAAAAATGCTCACCCAAAAGAGTGGGAAGAGCTGAAACGTCAAAAATACGCCGGAAATATTTCATAg
Protein Sequence: MDFCLLCLETNKSIDGCIEVNSEKWNYQNMKVLIDKHLWPMELKSSSWICKACGAELYEFHKFYKRIEVAQLKFGAVLKNENVTTELNQKDFIDSDSSQNPEDCKDNLFAESHLEPHIVMEEPLPTEFIIDGPFIKSEKIEEIGQQDIVVKQNRKRGRPAKEMSHDRTEIKEDPLKKTKRRISKISSTKKIKSDQKLQIAFESDTSEENQIDPHIQTDNLDDVKSSPTFRDKKENNDSETDPENCEEKQTLTETVKKKNHRNLDEKTLKEYDKIIADNFKIFCNICQSALDNFLSLRRHFKLEHKQRGYARCCKRNFFTRSLLVDHIHVHLNPEYFKCLQCSKVFSDRSRLQCHKRLHDDDSKLDKCDICGKLFADKGALKKHVLTHSSEKLFPCSICGKFFTNSFILNHHIEAVHQNKFVQICDICGKSIRCPTAFASHMEKHEVKSTPISCDVCGLLLSNKEGLKRHKNSQHPEGGKKEHTCHICSKVSPTQRALKSHIRSVHEQGFDYKCSLCEKSFKRPAVLREHMATHTGTALYTCLWCPRTFISNGNMYNHRKNAHPKEWEELKRQKYAGNIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260031;
90% Identity: iTF_00260031;
80% Identity: -